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Update to Dipy 1.2.0 #384

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merged 12 commits into from
Sep 9, 2020
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@36000 36000 commented Aug 25, 2020

The load_tractogram in dipy v1.1.1 uses srow to get the affine information from a reference. However, some files have affine stored in the q info (q offset, pixdim), not s. This is fixed in the current dipy master, where they find the best source for affine information, but not dipy 1.1.1 .

Until a new version of dipy is released, we can use this PR with some datasets. This PR will probably not need to be merged, especially if a new version of dipy is releasing soon.

@36000 36000 force-pushed the avoid_dipy_load_tractogram_bug branch from d942d41 to d65354d Compare August 25, 2020 22:04
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36000 commented Aug 26, 2020

Fixes #263

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arokem commented Sep 9, 2020

Heads up that DIPY 1.2 is due to be released any day now. We can probably require that as a dependency and then merge this PR?

@36000 36000 force-pushed the avoid_dipy_load_tractogram_bug branch from 1bc49c8 to ff9fa79 Compare September 9, 2020 17:45
@36000 36000 changed the title [WIP] Avoid dipy v1.1.1 load_tractogram bug Update to Dipy 1.2.0 Sep 9, 2020
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@36000 36000 merged commit 2734595 into yeatmanlab:master Sep 9, 2020
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