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Update base image, fix #370 #381

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merged 2 commits into from
Oct 9, 2024
Merged

Update base image, fix #370 #381

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046134d
Fix #370
aofarrel Oct 9, 2024
bc4f0f1
Remove redundant sed install
aofarrel Oct 9, 2024
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4 changes: 2 additions & 2 deletions install/Dockerfile
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Original file line number Diff line number Diff line change
@@ -1,11 +1,12 @@
FROM ubuntu:20.04
FROM ubuntu:22.04
ENV APT_KEY_DONT_WARN_ON_DANGEROUS_USAGE=DontWarn
ENV DEBIAN_FRONTEND=noninteractive
USER root
RUN apt-get update && apt-get install -yq --no-install-recommends \
git wget \
ca-certificates \
sudo python3 python3-pip
# faSomeRecords and faSize are needed for the UShER WDL workflow
WORKDIR /HOME/kentsource
RUN wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/faSomeRecords
RUN wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/faSize
Expand All @@ -16,6 +17,5 @@ WORKDIR usher
## Checkout latest release
#RUN git checkout $(git describe --tags `git rev-list --tags --max-count=1`)
RUN ./install/installUbuntu.sh
# faSomeRecords and faSize are needed for the UShER WDL workflow
## set the path
ENV PATH="/HOME/usher/build:/HOME/kentsource:${PATH}"
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