scripts

这是一个个人向的仓库, 里面记录的代码大部分都没有比较详细的使用说明, 或许一些脚本还存在bug, 所以请谨慎参考

simple2links.py

convert the .simple file from JCVI to the input of CIRCOS.

Usage: python3 simple2links.py xxx.yyy.anchors.simple

Required: xxx.bed and yyy.bed(should be in the same directory of xxx.yyy.anchors.simple)

Output: xxx.yyy.anchors.simple_link.txt

欢迎针对某个具体script提Issue

Name		Name	Last commit message	Last commit date
Latest commit History 81 Commits
C_tools		C_tools
HiC		HiC
annotation		annotation
assembly		assembly
comparative		comparative
misc		misc
pipeline		pipeline
.gitignore		.gitignore
README.md		README.md
STAR_counts.sh		STAR_counts.sh
assembly2agp.py		assembly2agp.py
bed12togtf.pl		bed12togtf.pl
bsa_upstream.sh		bsa_upstream.sh
calc_depth_from_cov.py		calc_depth_from_cov.py
calculate_4DTV_correction.pl		calculate_4DTV_correction.pl
colors.txt		colors.txt
eblastn.sh		eblastn.sh
get_asm_stats.py		get_asm_stats.py
igv_web.py		igv_web.py
kseq.h		kseq.h
mummplot.R		mummplot.R
pdf2jpg.py		pdf2jpg.py
simple2links.py		simple2links.py
split_fa_by_id.c		split_fa_by_id.c
t_dna_analysis.py		t_dna_analysis.py
vcf_slimming.py		vcf_slimming.py
visTree.R		visTree.R
wechat_article_parser.py		wechat_article_parser.py
zgtools.R		zgtools.R