Implement method_name() in

PreclusterDistanceFinder
wwood · Nov 23, 2023 · 812d941 · 812d941
1 parent d888f64
commit 812d941
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Showing 5 changed files with 22 additions and 0 deletions.
diff --git a/src/cluster_argument_parsing.rs b/src/cluster_argument_parsing.rs
@@ -36,6 +36,14 @@ impl PreclusterDistanceFinder for Preclusterer {
             Preclusterer::Skani(s) => s.distances(genome_fasta_paths),
         }
     }
+
+    fn method_name(&self) -> &str {
+        match self {
+            Preclusterer::Dashing(d) => d.method_name(),
+            Preclusterer::Finch(f) => f.method_name(),
+            Preclusterer::Skani(s) => s.method_name(),
+        }
+    }
 }
 
 pub enum Clusterer {

diff --git a/src/dashing.rs b/src/dashing.rs
@@ -18,6 +18,10 @@ impl PreclusterDistanceFinder for DashingPreclusterer {
     fn distances(&self, genome_fasta_paths: &[&str]) -> SortedPairGenomeDistanceCache {
         distances(genome_fasta_paths, self.min_ani, self.threads)
     }
+
+    fn method_name(&self) -> &str {
+        "dashing"
+    }
 }
 
 pub fn distances(

diff --git a/src/finch.rs b/src/finch.rs
@@ -17,6 +17,10 @@ impl PreclusterDistanceFinder for FinchPreclusterer {
             self.kmer_length,
         )
     }
+
+    fn method_name(&self) -> &str {
+        "finch"
+    }
 }
 
 pub fn distances(

diff --git a/src/lib.rs b/src/lib.rs
@@ -22,6 +22,8 @@ use crate::sorted_pair_genome_distance_cache::SortedPairGenomeDistanceCache;
 
 pub trait PreclusterDistanceFinder {
     fn distances(&self, genome_fasta_paths: &[&str]) -> SortedPairGenomeDistanceCache;
+
+    fn method_name(&self) -> &str;
 }
 
 pub trait ClusterDistanceFinder {

diff --git a/src/skani.rs b/src/skani.rs
@@ -24,6 +24,10 @@ impl PreclusterDistanceFinder for SkaniPreclusterer {
             self.min_aligned_threshold,
         )
     }
+
+    fn method_name(&self) -> &str {
+        "skani"
+    }
 }
 
 fn precluster_skani(