skani: Set screen: true.

wwood · Nov 19, 2023 · 2ca5cea · 2ca5cea
1 parent 5a21871
commit 2ca5cea
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Showing 2 changed files with 5 additions and 2 deletions.
diff --git a/Cargo.toml b/Cargo.toml
@@ -34,6 +34,7 @@ bird_tool_utils-man = "0.4.0"
 lazy_static = "1.4.0"
 ansi_term = "0.12"
 skani = "0.1.1"
+# skani = { path = "../skani" }
 concurrent-queue = "2"
 
 [dev-dependencies]

diff --git a/src/skani.rs b/src/skani.rs
@@ -97,7 +97,7 @@ impl ClusterDistanceFinder for SkaniClusterer {
 
 fn default_params(mode: Mode, min_aligned_frac: f32) -> (CommandParams, SketchParams) {
     let cmd_params = CommandParams {
-        screen: false,
+        screen: true,
         screen_val: 0.00,
         mode,
         out_file_name: "".to_string(),
@@ -109,7 +109,7 @@ fn default_params(mode: Mode, min_aligned_frac: f32) -> (CommandParams, SketchPa
         median: false,
         sparse: false,
         full_matrix: false,
-        max_results: 10000000,
+        max_results: 10000000, // for Triange usize::MAX,
         individual_contig_q: false,
         individual_contig_r: false,
         min_aligned_frac: min_aligned_frac as f64,
@@ -118,6 +118,8 @@ fn default_params(mode: Mode, min_aligned_frac: f32) -> (CommandParams, SketchPa
         learned_ani: true,
         learned_ani_cmd: false,
         detailed_out: false,
+        // distance: false,
+        // rescue_small: true,
     };
 
     let m = 1000;