Added tests for new datasetsand updated NEWS.

wviechtb · Aug 15, 2024 · d1fe261 · d1fe261
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commit d1fe261
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Showing 13 changed files with 59 additions and 15 deletions.
diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -17,13 +17,13 @@ jobs:
     steps:
       - uses: actions/checkout@v2
       - uses: r-lib/actions/setup-r@v1
-      - name: Install libcurl4-openssl-dev
+      - name: Install libcurl
         run: sudo apt-get install -y libcurl4-openssl-dev
       - name: Install TeX Live
         run: sudo apt-get install -y texlive texlive-fonts-extra
       - name: Query dependencies
         run: |
-          install.packages('remotes')
+          install.packages("remotes")
           saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
           writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
         shell: Rscript {0}

diff --git a/CONCEPTS b/CONCEPTS
@@ -20,7 +20,6 @@ fields/topics:
 
 # natural sciences / topics
 \concept{ecology}
-\concept{plants}
 \concept{evolution}
 \concept{climate change}
 \concept{phylogeny}
@@ -46,12 +45,6 @@ fields/topics:
 
 ############################################################################
 
-populations:
-
-\concept{infants}
-
-############################################################################
-
 outcome measures:
 
 \concept{raw mean differences}
@@ -96,15 +89,25 @@ methods/concepts:
 \concept{cluster-robust inference}
 \concept{outliers}
 \concept{model checks}
-\concept{second order meta-analysis}
 \concept{subgroup analysis}
 
 ############################################################################
 ############################################################################
 ############################################################################
 
-potential terms to add:
+potential groups/terms to add:
+
+fields/topics:
+
+\concept{plants}
+
+populations:
+
+\concept{infants}
+
+methods/concepts:
 
 \concept{meta-analysis of p-values}
+\concept{second order meta-analysis}
 
 ############################################################################
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: metadat
 Version: 1.3-0
-Date: 2024-01-22
+Date: 2024-08-15
 Title: Meta-Analysis Datasets
 Authors@R: c(
   person(given = "Thomas", family="White",
@@ -19,7 +19,7 @@ Authors@R: c(
   role = c("aut","cre"), email = "[email protected]",
   comment = c(ORCID = "0000-0003-3463-4063")),
   person(given = "Guido", family = "Schwarzer",
-  role = "dtc", email = "[email protected]-freiburg.de",
+  role = "dtc", email = "guido.schwarzer@uniklinik-freiburg.de",
   comment = c(ORCID = "0000-0001-6214-9087")))
 Depends: R (>= 4.0.0)
 Imports: utils, tools, mathjaxr
@@ -30,5 +30,6 @@ ByteCompile: TRUE
 LazyData: TRUE
 Encoding: UTF-8
 RdMacros: mathjaxr
+BuildManual: TRUE
 URL: https://github.com/wviechtb/metadat, https://wviechtb.github.io/metadat/
 BugReports: https://github.com/wviechtb/metadat/issues
diff --git a/NEWS.md b/NEWS.md
@@ -1,6 +1,6 @@
-# metadat 1.3-0 (2024-01-08)
+# metadat 1.3-0 (2024-08-15)
 
-- added `dat.bartos2023`, `dat.crisafulli2020`, `dat.dumouchel1994`, `dat.roever2022`, and `dat.ursino2021`
+- added `dat.bartos2023`, `dat.bassler2004`, `dat.crisafulli2020`, `dat.curtin2002`, `dat.dumouchel1994`, `dat.furukawa2003`, `dat.roever2022`, `dat.spooner2002`, and `dat.ursino2021`
 - fixed the mislabeling of sensitivity and specificity in the example code for `dat.kearon1998`
 - minor correction to one of the sampling variances in `dat.kalaian1996` and the coding of the `ets` variable
 

diff --git a/inst/help.rdata b/inst/help.rdata
diff --git a/man/dat.bassler2004.Rd b/man/dat.bassler2004.Rd
@@ -70,3 +70,6 @@ settings.meta(oldset)
 \concept{risk ratios}
 \concept{medicine}
 \concept{subgroup analysis}
+\section{Concepts}{
+   risk ratios, medicine, subgroup analysis
+}
diff --git a/man/dat.curtin2002.Rd b/man/dat.curtin2002.Rd
@@ -54,3 +54,6 @@ settings.meta(oldset)
 }
 \keyword{datasets}
 \concept{raw mean differences}
+\section{Concepts}{
+   raw mean differences
+}
diff --git a/man/dat.furukawa2003.Rd b/man/dat.furukawa2003.Rd
@@ -54,3 +54,6 @@ settings.meta(oldset)
 }
 \keyword{datasets}
 \concept{standardized mean differences}
+\section{Concepts}{
+   standardized mean differences
+}
diff --git a/man/dat.spooner2002.Rd b/man/dat.spooner2002.Rd
@@ -60,3 +60,6 @@ settings.meta(oldset)
 \keyword{datasets}
 \concept{raw mean differences}
 \concept{subgroup analysis}
+\section{Concepts}{
+   raw mean differences, subgroup analysis
+}
diff --git a/tests/testthat/test_dat.bassler2004.r b/tests/testthat/test_dat.bassler2004.r
@@ -0,0 +1,7 @@
+context("Checking: dat.bassler2004")
+
+library(digest)
+
+test_that("md5 hash matches for the data", {
+   expect_match(digest(metadat::dat.bassler2004, algo="md5"), "b2602c6ffa358e30992b5de028bcc1ff")
+})
diff --git a/tests/testthat/test_dat.curtin2002.r b/tests/testthat/test_dat.curtin2002.r
@@ -0,0 +1,7 @@
+context("Checking: dat.curtin2002")
+
+library(digest)
+
+test_that("md5 hash matches for the data", {
+   expect_match(digest(metadat::dat.curtin2002, algo="md5"), "3f6600770272aa68c2720dbfb78d0966")
+})
diff --git a/tests/testthat/test_dat.furukawa2003.r b/tests/testthat/test_dat.furukawa2003.r
@@ -0,0 +1,7 @@
+context("Checking: dat.furukawa2003")
+
+library(digest)
+
+test_that("md5 hash matches for the data", {
+   expect_match(digest(metadat::dat.furukawa2003, algo="md5"), "e9f22be16a3dfd4832663ede1fe9d462")
+})
diff --git a/tests/testthat/test_dat.spooner2002.r b/tests/testthat/test_dat.spooner2002.r
@@ -0,0 +1,7 @@
+context("Checking: dat.spooner2002")
+
+library(digest)
+
+test_that("md5 hash matches for the data", {
+   expect_match(digest(metadat::dat.spooner2002, algo="md5"), "d35bdc852b7c6204236240f217046470")
+})