add new parameter for hla consensus mode

wustl-oncology · Apr 13, 2022 · afc6df1 · afc6df1
1 parent df7a74f
commit afc6df1
Show file tree

Hide file tree

Showing 2 changed files with 4 additions and 0 deletions.
diff --git a/example_yamls/human_GRCh38_ens105/hcc1395_immuno_cloud-WDL.yaml b/example_yamls/human_GRCh38_ens105/hcc1395_immuno_cloud-WDL.yaml
@@ -220,6 +220,8 @@ immuno.trna_vaf: 0.2
 immuno.normal_cov: 50
 immuno.tdna_cov: 50
 
+immuno.hlaConsensus.hla_source_mode: consensus
+
 # ------------------ If you have clinical or otherwise known HLA typing, include here and it will be integrated with Optitype calls ---------------
 # Source of HLA types for hcc1395: ...
 #immuno.clinical_mhc_classI_alleles:

diff --git a/example_yamls/human_GRCh38_ens105/hcc1395_immuno_local-WDL.yaml b/example_yamls/human_GRCh38_ens105/hcc1395_immuno_local-WDL.yaml
@@ -221,6 +221,8 @@ immuno.trna_vaf: 0.2
 immuno.normal_cov: 50
 immuno.tdna_cov: 50
 
+immuno.hlaConsensus.hla_source_mode: consensus
+
 # ------------------ If you have clinical or otherwise known HLA typing, include here and it will be integrated with Optitype calls ---------------
 # Source of HLA types for hcc1395: ...
 #immuno.clinical_mhc_classI_alleles: