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update Changes for release 0.39.0
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dozy committed Feb 12, 2024
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0.39.0
- use "samtools index" instead of "cram_index to create cram indexes
- for bam and cram index creation, use "samtools index -o <index_file>" to explicitly indicate the index file

0.38.0
- add additional autosome specific coverage threshold to final_output_prep.json

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