Merge pull request #350 from dkj/samtools1.21

Samtools/htslib 1.21
wtsi-npg · Sep 13, 2024 · 252e17b · 252e17b
2 parents a325e41 + 637291e
commit 252e17b
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diff --git a/.github/workflows/testing_and_building_repo.yml b/.github/workflows/testing_and_building_repo.yml
@@ -58,7 +58,7 @@ jobs:
     # Archive logs if failure
     - name: Archive CPAN logs
       if: ${{ failure() }}
-      uses: actions/upload-artifact@v2
+      uses: actions/upload-artifact@v3
       with:
         name: cpan_log
         path: /home/runner/.cpanm/work/*/build.log

diff --git a/Dockerfile b/Dockerfile
@@ -5,11 +5,11 @@ ARG BIOBAMBAM2_VERSION="2.0.185-release-20221211202123"
 ARG BWA_VERSION="0.7.18"
 ARG BWA_MEM2_VERSION="2.2.1"
 ARG DEFLATE_VERSION="1.20"
-ARG HTSLIB_VERSION="1.20"
+ARG HTSLIB_VERSION="1.21"
 ARG IO_LIB_VERSION="1.15.0"
 ARG LIBMAUS2_VERSION="2.0.813-release-20221210220409"
 ARG NPG_SEQ_COMMON_VERSION="51.1"
-ARG SAMTOOLS_VERSION="1.20"
+ARG SAMTOOLS_VERSION="1.21"
 ARG TEEPOT_VERSION="1.2.0"
 ARG PCAP_CORE_VERSION="5.7.0"