64.4

• utility QC feature: db tables, DBIx classes, retrieval
• Add STAR aligner bams as a valid RNA alignments
• update bam_flagstats to be able run when no markdups metrics file exists

63.1

• label fix for rna_seqc in SeqQC viewer
• MySQL does not save correctly integers to float columns;
  change column definitions for rna_seqc

63.0

• RNA-SeQC
  - added template for rna_seqc check with selected metrics shown in summary
  - include a link to original RNA-SeQC report in check's template
  - npg_qc::autoqc::qc_store - load rna_seqc results into new rna_seqc table in npg_qc database.
• SeqQC: Build will fail if no node, npm or bower are available in path
• do not install NPGQC web app
• use one version of samtools
• update script for deleting autoqc database results so that it can handle composition-based tables
• remove attribute qc_report_dir from check object: the output directory is created by default using the sample's filename root
• increase HTTP timeout when reporting manual qc outcomes to LIMs

62.6

• make building the iRODS handle of npg_qc::autoqc::checks::genotype lazy to avoid calling baton until required at runtime
• translation from a database composition representation to the npg_tracking::glossary::composition type object
• db query for compisition-based tables should include a condition on tag_index if only lanes or plexes are being retrieved
• Fix in npg_qc::utils::bam_genotype for rare out of order mpileup failures
• Travis CI build: when building dependencies, us the same branch as the one the pull request is made to.
• back to testing with mysql 5.7.13 in travis
• drop node 0.12 from node travis matrix
• add perl 5.22-shrplib to travis matrix
• to reduce uncertainty in ranking close results, increase precision used for ranking contamination results
• call_gtck_composite_rpt.pl - supply rpt list to genotype check
• Code and tests changes to reduce number of warnings under Perl 5.22.2
• sequence mismatch - do not return PDL special values, treat NaN as a bad value and return undefined instead