merge from devel to create release 65.0#532

Merged

mgcam merged 37 commits intomasterfrom devel

Jun 21, 2018

+1,397-6,510

Commits on May 17, 2018

add genotype_call_results_reporter script
ces
committed

Commits on May 20, 2018

trim tag metrics in viewer
ces
committed

Commits on May 21, 2018

Merge pull request #517 from wtsi-npg/master
dozy
authored

Commits on May 24, 2018

Commits on May 25, 2018

Commits on May 26, 2018

Make use of recent bwa (typ. > 0.7) explicit with bwa0_6 in checks
dkj
committed

Commits on May 27, 2018

Commits on May 28, 2018

Merge pull request #521 from dkj/req_explicit_aligner
mgcam
authored

Commits on May 29, 2018

Merge pull request #518 from dozy/spatial_filter_file_names
dozy
authored

Commits on Jun 2, 2018

Commits on Jun 6, 2018

Merge pull request #525 from mgcam/no_tracking_xml
dkj
authored

Commits on Jun 8, 2018

Commits on Jun 13, 2018

Merge pull request #524 from mgcam/upstreamtags_tidyup
dozy
authored

Commits on Jun 19, 2018

merge two db update scripts into one; add release number to Changes file (#530 )

mgcam
authored and
ces
committed
use default bcftools executable
mgcam
committed

Commits on Jun 20, 2018

Merge pull request #531 from mgcam/no-bcftools1
dozy
authored

Commits on Jun 21, 2018

finalise list of changes for release 65.0
mgcam
authored