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Mysql 5 7 13 #377

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merged 6 commits into from
Nov 24, 2016
Merged

Mysql 5 7 13 #377

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6618a1f
back to mysql 5.7.13
jmtcsngr Nov 17, 2016
c8576de
no templates rna_seqc results - we should not try rendering
mgcam Nov 18, 2016
e764ce6
fix release number
mgcam Nov 21, 2016
a7ebec0
Force comparison as numbers so 0 and 0.00 are considered equal
mgcam Nov 24, 2016
f447b5a
update Changes
jmtcsngr Nov 24, 2016
74741fd
fix conflict in Changes
jmtcsngr Nov 24, 2016
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1 change: 1 addition & 0 deletions .travis.yml
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Expand Up @@ -18,6 +18,7 @@ env:
- TRAVIS_NODE_VERSION="4.5.0"

before_install:
- ./.travis/before_install_mysql57.sh
- ./.travis/before_install.sh
install:
- ./.travis/install.sh
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22 changes: 16 additions & 6 deletions .travis/before_install_mysql57.sh
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Expand Up @@ -11,20 +11,30 @@ sudo apt-get autoclean
sudo rm -rf /var/lib/mysql
sudo rm -rf /var/log/mysql

# Specify which version we want
echo "deb http://repo.mysql.com/apt/ubuntu/ precise mysql-5.7" | sudo tee /etc/apt/sources.list.d/mysql.list
sudo -E apt-get update -q
sudo -E apt-get -q -y install mysql-server libmysqlclient-dev libdbd-mysql-perl
# Get packages from oracle
sudo -E apt-get install libaio1 apparmor
wget http://downloads.mysql.com/archives/get/file/mysql-common_5.7.13-1ubuntu12.04_amd64.deb
wget http://downloads.mysql.com/archives/get/file/libmysqlclient20_5.7.13-1ubuntu12.04_amd64.deb
wget http://downloads.mysql.com/archives/get/file/mysql-community-client_5.7.13-1ubuntu12.04_amd64.deb
wget http://downloads.mysql.com/archives/get/file/mysql-client_5.7.13-1ubuntu12.04_amd64.deb
wget http://downloads.mysql.com/archives/get/file/mysql-community-server_5.7.13-1ubuntu12.04_amd64.deb
wget http://downloads.mysql.com/archives/get/file/mysql-server_5.7.13-1ubuntu12.04_amd64.deb
sudo debconf-set-selections <<< "mysql-server mysql-server/root_password password \"''\""
sudo debconf-set-selections <<< "mysql-server mysql-server/root_password_again password \"''\""
sudo dpkg-preconfigure mysql-community-server_5.7.13-1ubuntu12.04_amd64.deb
sudo dpkg -i mysql-{common,community-client,client,community-server,server}_*.deb
sudo dpkg -i libmysqlclient20_5.7.13-1ubuntu12.04_amd64.deb
sudo -E apt-get -q -y install libmysqlclient-dev libdbd-mysql-perl

sudo /etc/init.d/mysql stop
sleep 5
# Start the server without password
sudo mysqld --skip-grant-tables --explicit_defaults_for_timestamp=false --sql-mode="STRICT_TRANS_TABLES" &
sudo mysqld --user=root --skip-grant-tables --explicit_defaults_for_timestamp=false --sql-mode="STRICT_TRANS_TABLES" &

#Give some time for server to start
sleep 10

# print versions
mysql --version
mysql -e "SELECT @@GLOBAL.sql_mode; SELECT @@SESSION.sql_mode; SHOW GLOBAL VARIABLES LIKE '%version%'; show variables like '%time%';" -uroot
mysql -h localhost -e "SELECT @@GLOBAL.sql_mode; SELECT @@SESSION.sql_mode; SHOW GLOBAL VARIABLES LIKE '%version%'; show variables like '%time%';" -uroot

2 changes: 2 additions & 0 deletions Changes
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@@ -1,5 +1,7 @@
LIST OF CHANGES FOR NPG-QC PACKAGE

- back to testing with mysql 5.7.13 in travis

release 62.5
- a very concise replacement for NPG_QC pages
- no templates rna_seqc results - we should not try rendering
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