Merge pull request #536 from wtsi-npg/devel

merge from wtsi devel to masterto create release 65.1
wtsi-npg · Jun 29, 2018 · ef43e16 · ef43e16
2 parents 60df3a3 + 2752add
commit ef43e16
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diff --git a/Changes b/Changes
@@ -1,5 +1,8 @@
 LIST OF CHANGES FOR NPG-QC PACKAGE
 
+release 65.1
+ - bwa to bwa0_6 for rna_seqc rRNA alignment
+
 release 65.0
  - adapter autoqc check - discard code for fastq input
  - add genotype_call_results_reporter script to report genotype_call

diff --git a/lib/npg_qc/autoqc/checks/rna_seqc.pm b/lib/npg_qc/autoqc/checks/rna_seqc.pm
@@ -28,7 +28,7 @@ Readonly::Scalar my $CHILD_ERROR_SHIFT => 8;
 Readonly::Scalar my $MAX_READS         => 100;
 Readonly::Scalar my $MIN_READS         => 50;
 Readonly::Scalar my $PAIRED_FLAG       => 0x1;
-Readonly::Scalar my $RRNA_ALIGNER      => q[bwa];
+Readonly::Scalar my $RRNA_ALIGNER      => q[bwa0_6];
 Readonly::Scalar my $RRNA_STRAIN       => q[default_rRNA];
 Readonly::Scalar my $METRICS_FILE_NAME => q[metrics.tsv];
 Readonly::Scalar my $QUANT_FILE_NAME   => q[quant.genes.sf];