Merge pull request #535 from ces/bwa

bwa to bwa0_6 for rna_seqc rRNA alignment
wtsi-npg · Jun 29, 2018 · cf15381 · cf15381
2 parents 60df3a3 + 7cd77d7
commit cf15381
Show file tree

Hide file tree

Showing 2 changed files with 2 additions and 1 deletion.
diff --git a/Changes b/Changes
@@ -22,6 +22,7 @@ release 65.0
  - all C source code moved to https://github.com/wtsi-npg/npg_qc_utils, executables are
    built by Conda https://github.com/wtsi-npg/npg_conda/tree/devel/recipes/npg_qc_utils/65.0;
    Build.PL changed accordingly
+ - bwa to bwa0_6 for rna_seqc rRNA alignment
 
 release 64.6.3
  - update parsing of spatial filter stats in spatial_filter QC check

diff --git a/lib/npg_qc/autoqc/checks/rna_seqc.pm b/lib/npg_qc/autoqc/checks/rna_seqc.pm
@@ -28,7 +28,7 @@ Readonly::Scalar my $CHILD_ERROR_SHIFT => 8;
 Readonly::Scalar my $MAX_READS         => 100;
 Readonly::Scalar my $MIN_READS         => 50;
 Readonly::Scalar my $PAIRED_FLAG       => 0x1;
-Readonly::Scalar my $RRNA_ALIGNER      => q[bwa];
+Readonly::Scalar my $RRNA_ALIGNER      => q[bwa0_6];
 Readonly::Scalar my $RRNA_STRAIN       => q[default_rRNA];
 Readonly::Scalar my $METRICS_FILE_NAME => q[metrics.tsv];
 Readonly::Scalar my $QUANT_FILE_NAME   => q[quant.genes.sf];