nf-aligning

Nextflow pipeline to perform aligning on the reference genome with bwa

Metadata

Fill in paths required files in params.config
Modify pan-environment configuration in nextflow.config
Run the pipeline from the data stored on the server nextflow run main.nf -profile Altius
Or start from SRA nextflow run main.nf -profile Altius -entry alignFromSRA

Name		Name	Last commit message	Last commit date
Latest commit History 448 Commits
bin		bin
.dockerignore		.dockerignore
Dockerfile		Dockerfile
LICENSE		LICENSE
README.md		README.md
aligning.nf		aligning.nf
encode_download.nf		encode_download.nf
environment.yml		environment.yml
hotspots_calling.hotspot3.nf		hotspots_calling.hotspot3.nf
hotspots_calling.nf		hotspots_calling.nf
main.nf		main.nf
nextflow.config		nextflow.config
params.config		params.config
params.human.config		params.human.config
params.mouse.config		params.mouse.config
subsampling.nf		subsampling.nf
trimming.nf		trimming.nf