updating docs for patch release

will-rowe · May 8, 2020 · 5cf7ec8 · 5cf7ec8
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diff --git a/docs/conf.py b/docs/conf.py
@@ -32,7 +32,7 @@
 # The short X.Y version
 version = '1.1'
 # The full version, including alpha/beta/rc tags
-release = '1.1.0'
+release = '1.1.2'
 
 
 # -- General configuration ---------------------------------------------------

diff --git a/docs/using-groot.md b/docs/using-groot.md
@@ -120,6 +120,10 @@ gunzip -c file.gz | ./groot align -i grootIndex -p 8 | ./groot report
 
 Multiple FASTQ files can be specified as input, however all are treated as the same sample and paired-end info isn't used. To specify multiple files, make sure they are comma separated (`-f fileA.fq,fileB.fq`) or use gunzip/cat with a wildcard (gunzip -c \*.fq.gz | groot...).
 
+Some more flags that can be used:
+
+- `--noAlign`: if set, no exact alignment will be performed (graphs will still be weighted using approximate read mappings)
+
 ### report
 
 The `report` subcommand is used to processes graph traversals and generate a resistome profile for a sample. Here is an example:

diff --git a/src/version/version.go b/src/version/version.go
@@ -9,7 +9,7 @@ const major = 1
 const minor = 1
 
 // patch is the patch version number
-const patch = 1
+const patch = 2
 
 // GetVersion returns the full version string for the current GROOT software
 func GetVersion() string {