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Load zarrreader_jars, including OMEZarrReader-0.5.1 from maven
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will-moore committed Jun 20, 2024
1 parent f588960 commit 9e846b4
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Showing 3 changed files with 16 additions and 10 deletions.
6 changes: 4 additions & 2 deletions ansible/group_vars/omero-hosts.yml
Original file line number Diff line number Diff line change
Expand Up @@ -19,10 +19,9 @@ idr_omero_web_release: 5.25.0
# _omero_py_version: ==5.9.0

artifactory_baseurl: "https://artifacts.openmicroscopy.org/artifactory/maven"
maven_central_baseurl: "https://repo1.maven.org/maven2"

# list from https://github.com/IDR/deployment/pull/420#issuecomment-2173437956
omero_client_jars:
zarrreader_jars:
- name: aws-java-sdk-s3
group: com/amazonaws
version: "1.12.659"
Expand All @@ -47,6 +46,9 @@ omero_client_jars:
- name: jackson-dataformat-cbor
group: com/fasterxml/jackson/dataformat
version: "2.12.6"
- name: OMEZarrReader
group: ome
version: "0.5.1"

ice_install_devel: false
ice_install_python: false
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10 changes: 6 additions & 4 deletions ansible/idr-omero-readonly.yml
Original file line number Diff line number Diff line change
Expand Up @@ -208,17 +208,19 @@
- name: Override lib/server JARs
become: yes
get_url:
url: "{{ artifactory_baseurl }}/ome/OMEZarrReader/0.4.0/OMEZarrReader-0.4.0.jar"
dest: "{{ omero_common_basedir }}/server/OMERO.server/lib/server/OMEZarrReader.jar"
url: "{{ artifactory_baseurl }}/{{ item.group }}/{{ item.name }}/{{ item.version }}/{{ item.name }}-{{ item.version }}.jar"
dest: "{{ omero_common_basedir }}/server/OMERO.server/lib/server/{{ item.name }}.jar"
force: yes
with_items: "{{ zarrreader_jars }}"
notify: restart omero-server

- name: Override lib/client JARs
become: yes
get_url:
url: "{{ artifactory_baseurl }}/ome/OMEZarrReader/0.4.0/OMEZarrReader-0.4.0.jar"
dest: "{{ omero_common_basedir }}/server/OMERO.server/lib/client/OMEZarrReader.jar"
url: "{{ artifactory_baseurl }}/{{ item.group }}/{{ item.name }}/{{ item.version }}/{{ item.name }}-{{ item.version }}.jar"
dest: "{{ omero_common_basedir }}/server/OMERO.server/lib/client/{{ item.name }}.jar"
force: yes
with_items: "{{ zarrreader_jars }}"
notify: restart omero-server

- name: Remove OMERO scripts
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10 changes: 6 additions & 4 deletions ansible/idr-omero.yml
Original file line number Diff line number Diff line change
Expand Up @@ -78,17 +78,19 @@
- name: Override lib/server JARs
become: yes
get_url:
url: "{{ artifactory_baseurl }}/ome/OMEZarrReader/0.5.1/OMEZarrReader-0.5.1.jar"
dest: "{{ omero_common_basedir }}/server/OMERO.server/lib/server/OMEZarrReader.jar"
url: "{{ artifactory_baseurl }}/{{ item.group }}/{{ item.name }}/{{ item.version }}/{{ item.name }}-{{ item.version }}.jar"
dest: "{{ omero_common_basedir }}/server/OMERO.server/lib/server/{{ item.name }}.jar"
force: yes
with_items: "{{ zarrreader_jars }}"
notify: restart omero-server

- name: Override lib/client JARs
become: yes
get_url:
url: "{{ artifactory_baseurl }}/ome/OMEZarrReader/0.5.1/OMEZarrReader-0.5.1.jar"
dest: "{{ omero_common_basedir }}/server/OMERO.server/lib/client/OMEZarrReader.jar"
url: "{{ artifactory_baseurl }}/{{ item.group }}/{{ item.name }}/{{ item.version }}/{{ item.name }}-{{ item.version }}.jar"
dest: "{{ omero_common_basedir }}/server/OMERO.server/lib/client/{{ item.name }}.jar"
force: yes
with_items: "{{ zarrreader_jars }}"
notify: restart omero-server

- name: Remove OMERO scripts
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