References

If you find cd-hit helpful to your research and study, please kindly cite the relevant references from the list below.

1. Weizhong Li, Lukasz Jaroszewski & Adam Godzik. Clustering of highly homologous sequences to reduce the size of large protein databases. Bioinformatics (2001) 17:282-283, PDF, Pubmed
2. Weizhong Li, Lukasz Jaroszewski & Adam Godzik. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics (2002) 18: 77-82, PDF, Pubmed
3. Weizhong Li & Adam Godzik. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics (2006) 22:1658-1659, PDF, Pubmed
4. Ying Huang, Beifang Niu, Ying Gao, Limin Fu and Weizhong Li. CD-HIT Suite: a web server for clustering and comparing biological sequences. Bioinformatics, (2010). 26:680 PDF Pubmed
5. Beifang Niu, Limin Fu, Shulei Sun and Weizhong Li, Artificial and natural duplicates in pyrosequencing reads of metagenomic data. BMC Bioinformatics, (2010), 11:187 PDF Pubmed
6. Limin Fu, Beifang Niu, Zhengwei Zhu, Sitao Wu and Weizhong Li, CD-HIT: accelerated for clustering the next generation sequencing data. Bioinformatics, (2012), 28 (23): 3150-3152. doi: 10.1093/bioinformatics/bts565, PDF, Pubmed
7. Weizhong Li, Limin Fu, Beifang Niu, Sitao Wu and John Wooley. Ultrafast clustering algorithms for metagenomic of CD-HIT-OTU-MiSeqsequence analysis. Briefings in Bioinformatics, (2012) 13 (6): 656-668. doi: 10.1093/bib/bbs035 PDF