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Modernize ClubCpG dependencies and dev environment #24
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* added poetry env * disabled testing of imputation as this model was trained on an outdates version of scikit-learn * travis ci no longer online * min supported python 3.9 * updated tests to use poetry * refactor code for use with poetry * refactored for poetry install of scripts and added additional error handling * Don't write model if not successfully trained * poetry handle scripts * reuse setup workflow * attempt to fix workflow syntax * removed these files, not ready for them yet * undo workflow changes * fixed indent for sphinx * adapted to poetry * update doc groups * latest docs build * update workflows, attempt to build docs * Added classifiers * run sphinx without make * make docs deps optional * updated workflow steps
canthonyscott
changed the title
Misc updates
Modernize ClubCpG dependencies and dev environment
Jul 7, 2023
@cjgunase I added you as a reviewer so you could put your eyes on this before I merge it to master and deploy |
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This pull request includes the following:
setup.py
removed in favor of apyproject.toml
scikit-learn
No logic has been changed with ClubCpG itself.
A Minor version bump from
v.0.2.x
tov0.3.0
has been included mostly to indicate that these updates will no longer work with older versions of Python