#357 2023b PR version

vscentrum · Nov 13, 2024 · 311d567 · 311d567
1 parent 867ad6f
commit 311d567
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Showing 10 changed files with 6 additions and 129 deletions.
diff --git a/357_Synthcity/2023b_v0.2.11_new/PyTorch-Lightning-1.9.5-2023b.eb b/357_Synthcity/2023b_v0.2.11_new/PyTorch-Lightning-1.9.5-2023b.eb
@@ -34,7 +34,7 @@ exts_list = [
     ('torchmetrics', '1.5.1', {
         'checksums': ['9701632cf811bc460abf07bd7b971b79c1ae9c8231e03d495b53a0975e43fe07'],
     }),
-    ('pytorch-lightning', version, {
+    ('%(namelower)s', version, {
         'checksums': ['925fe7b80ddf04859fa385aa493b260be4000b11a2f22447afb4a932d1f07d26'],
     }),
 ]

diff --git a/357_Synthcity/2023b_v0.2.11_new/decaf-2023b.eb b/357_Synthcity/2023b_v0.2.11_new/decaf-2023b.eb
@@ -9,18 +9,6 @@ Generating Fair Synthetic Data Using Causally-Aware Generative Networks"""
 
 toolchain = {'name': 'foss', 'version': '2023b'}
 
-# DEPS:
-    # ok loguru
-    # ok networkx>=2.0,<3.0 -> in EB v3.2.1 -> to exts
-    # OK numpy>=1.19
-    # OK pandas
-    # OK pytorch-lightning<2.0
-    # OK scikit-learn
-    # OK scipy
-    # OK torch>=1.9
-    # OK - created: torchtext>=0.10
-    # OK xgboost
-
 local_pytorch_version = '2.1.2'
 dependencies = [
     ('Python', '3.11.5'),

diff --git a/357_Synthcity/2023b_v0.2.11_new/fastai-2023b.eb b/357_Synthcity/2023b_v0.2.11_new/fastai-2023b.eb
@@ -10,22 +10,6 @@ toolchain = {'name': 'foss', 'version': '2023b'}
 
 use_pip = True
 
-# DEPS:
-    # OK fastdownload>=0.0.5,<2 
-    # OK fastcore>=1.5.29,<1.8 
-    # OK torchvision>=0.11 
-    # OK matplotlib 
-    # OK pandas 
-    # OK requests 
-    # OK pyyaml 
-    # OK fastprogress>=0.2.4 
-    # OK pillow>=9.0.0 
-    # OK scikit-learn 
-    # OK scipy 
-    # OK spacy<4 
-    # OK packaging
-    # OK torch>=1.10,<2.6
-
 dependencies = [
     ('Python', '3.11.5'),
     ('PyTorch', '2.1.2'),

diff --git a/357_Synthcity/2023b_v0.2.11_new/monai-2023b.eb b/357_Synthcity/2023b_v0.2.11_new/monai-2023b.eb
@@ -17,53 +17,6 @@ source_urls = [GITHUB_SOURCE]
 sources = [{'download_filename': '%(version)s.tar.gz', 'filename': SOURCE_TAR_GZ}]
 checksums = ['3ed592c7a760f5c3084021da5585cd1ba5e52a969b85a62e1f15495cb71ae26e']
 
-# DEPS:
-    # setup_requires =
-    #     torch
-    #     OK ninja
-    # install_requires =
-    #     torch>=1.9
-    #     numpy>=1.20
-    # extras =
-        # nibabel
-        # ninja
-        # scikit-image>=0.14.2
-        # scipy>=1.7.1
-        # pillow
-        # tensorboard
-        # gdown>=4.7.3
-        # pytorch-ignite==0.4.11
-        # torchvision
-        # itk>=5.2
-        # tqdm>=4.47.0
-        # lmdb
-        # psutil
-        # cucim-cu12; python_version >= '3.9' and python_version <= '3.10'
-        # openslide-python
-        # tifffile
-        # imagecodecs
-        # pandas
-        # einops
-        # transformers>=4.36.0, <4.41.0; python_version <= '3.10'
-        # mlflow>=2.12.2
-        # clearml>=1.10.0rc0
-        # matplotlib>=3.6.3
-        # tensorboardX
-        # pyyaml
-        # fire
-        # jsonschema
-        # pynrrd
-        # pydicom
-        # h5py
-        # nni
-        # optuna
-        # onnx>=1.13.0
-        # onnxruntime; python_version <= '3.10'
-        # zarr
-        # lpips==0.1.4
-        # nvidia-ml-py
-        # huggingface_hub - NEW one
-
 builddependencies = [
     ('Ninja', '1.11.1'),
 ]
@@ -79,15 +32,6 @@ download_dep_fail = True
 
 preinstallopts = 'BUILD_MONAI=1'
 
-# exts_list = [
-#     (name, version, {
-#         'preinstallopts': 'BUILD_MONAI=1',
-#         'source_urls': ['https://github.com/%(github_account)s/%(name)s/archive'],
-#         'sources': ['%(version)s.tar.gz'],
-#         'checksums': ['3ed592c7a760f5c3084021da5585cd1ba5e52a969b85a62e1f15495cb71ae26e'],
-#     }),
-# ]
-
 sanity_pip_check = True
 
 sanity_check_commands = ["python -c 'import monai; monai.config.print_config()'"]

diff --git a/357_Synthcity/2023b_v0.2.11_new/spaCy-2023b.eb b/357_Synthcity/2023b_v0.2.11_new/spaCy-2023b.eb
@@ -94,9 +94,3 @@ exts_list = [
 sanity_pip_check = True
 
 moduleclass = 'data'
-
-# language-data 1.2.0 requires marisa-trie, which is not installed.
-# E1: OK
-    # -> use typer v 0.12.0 - there is no pdm dep
-    # <- failed on build
-        # ModuleNotFoundError: No module named 'pdm'
diff --git a/357_Synthcity/2023b_v0.2.11_new/tensorboard-2023b.eb b/357_Synthcity/2023b_v0.2.11_new/tensorboard-2023b.eb
@@ -9,21 +9,6 @@ understanding your TensorFlow runs and graphs."""
 
 toolchain = {'name': 'gfbf', 'version': '2023b'}
 
-# postinstallpatches = [
-#     ('tensorboard-2.10_jupyterhub-support.patch', 'lib/python%(pyshortver)s/site-packages'),
-# ]
-
-# DEPS:
-    # ok absl-py >= 0.4
-    # OK grpcio >= 1.48.2
-    # OK markdown >= 2.6.8
-    # OK numpy >= 1.12.0
-    # OK packaging
-    # OK protobuf >= 3.19.6, != 4.24.0
-    # OK setuptools >= 41.0.0
-    # ok tensorboard-data-server >= 0.7.0, < 0.8.0
-    # ok werkzeug >= 1.0.1
-
 builddependencies = [
     ('poetry', '1.6.1'),
 ]
@@ -71,12 +56,4 @@ exts_list = [
     }),
 ]
 
-#  Relax restriction on protobuf dependency as issue was fixed
-#  in https://github.com/protocolbuffers/upb/pull/1514
-#  see also: https://github.com/easybuilders/easybuild-easyconfigs/pull/19671
-# postinstallcmds = [
-#     'sed -i "s/Requires-Dist: protobuf.*/Requires-Dist: protobuf >=3.19.6/g" ' +
-#     '%(installdir)s/lib/python%(pyshortver)s/site-packages/%(name)s-%(version)s.dist-info/METADATA',
-# ]
-
 moduleclass = 'lib'
diff --git a/357_Synthcity/2023b_v0.2.11_new/torchdata-2023b.eb b/357_Synthcity/2023b_v0.2.11_new/torchdata-2023b.eb
@@ -3,7 +3,7 @@ easyblock = 'PythonBundle'
 name = 'torchdata'
 version = '0.7.1'
 local_pytorch_version = '2.1.2'
-# versionsuffix = '-PyTorch-' + local_pytorch_version
+versionsuffix = '-PyTorch-%s' % local_pytorch_version
 
 homepage = 'https://github.com/pytorch/data'
 description = """
@@ -23,10 +23,10 @@ use_pip = True
 
 exts_list = [
     (name, version, {
-        'source_tmpl': 'v%(version)s.tar.gz',
+        'preinstallopts': "USE_SYSTEM_LIBS=1 ",
+        'sources': [{'download_filename': 'v%(version)s.tar.gz', 'filename': SOURCE_TAR_GZ}],
         'source_urls': ['https://github.com/pytorch/data/archive'],
         'checksums': ['ef9bbdcee759b53c3c9d99e76eb0a66da33d36bfb7f859a25a9b5e737a51fa23'],
-        'preinstallopts': "USE_SYSTEM_LIBS=1 ",
     }),
 ]
 

diff --git a/357_Synthcity/2023b_v0.2.11_new/torchtext-2023b.eb b/357_Synthcity/2023b_v0.2.11_new/torchtext-2023b.eb
@@ -12,7 +12,7 @@ toolchain = {'name': 'foss', 'version': '2023b'}
 
 # Sources are no longer available in PyPI, it only has wheels
 source_urls = ['https://github.com/pytorch/text/archive/']
-sources = [{'download_filename': 'v%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}]
+sources = [{'download_filename': 'v%(version)s.tar.gz', 'filename': SOURCE_TAR_GZ}]
 patches = [
     {'name': 'torchtext-0.14.1_use-system-libs.patch', 'alt_location': 'PyTorch-bundle'},
     {'name': 'torchtext-0.16.2_download-to-project-root.patch', 'alt_location': 'PyTorch-bundle'},
@@ -38,7 +38,7 @@ dependencies = [
     ('PyTorch', local_pytorch_version),
     ('double-conversion', '3.3.0'),
     ('utf8proc', '2.9.0'),
-    ('torchdata', '0.7.1'),
+    ('torchdata', '0.7.1', '-PyTorch-%s' % local_pytorch_version),
 ]
 
 download_dep_fail = True,

diff --git a/357_Synthcity/2023b_v0.2.11_new/torchvision-2023b.eb b/357_Synthcity/2023b_v0.2.11_new/torchvision-2023b.eb
@@ -33,12 +33,4 @@ dependencies = [
     ('PyTorch', '2.1.2'),
 ]
 
-# runtest = (
-#     'pytest'
-#     ' -m "not xfail"'  # don't run tests that are expected that they might fail
-#     ' -k "not test_frame_reading_mem_vs_file"'  # this one hangs
-#     '" and not test_antialias_default_warning"'  # flaky test which is removed in later versions
-# )
-# testinstall = True
-
 moduleclass = 'vis'
diff --git a/357_Synthcity/2023b_v0.2.11_new/tsai-2023b.eb b/357_Synthcity/2023b_v0.2.11_new/tsai-2023b.eb
@@ -9,8 +9,6 @@ description = """Time series Timeseries Deep Learning Machine Learning Python Py
 
 toolchain = {'name': 'foss', 'version': '2023b'}
 
-# pyts 0.13.0 requires numba, which is not installed. -> no NUMBA for 2023b
-    # PR: https://github.com/easybuilders/easybuild-easyconfigs/pull/21691
 dependencies = [
     ('Python', '3.11.5'),
     ('fastai', '2.7.18'),