#453 subset-bam build problem

453_trusTEr/bamtofastq.eb

@@ -0,0 +1,124 @@
+easyblock = 'Cargo'
+
+name = 'bamtofastq'
+version = '1.4.1'
+
+homepage = 'https://github.com/10XGenomics/bamtofastq'
+description = """Convert 10x BAM files to the original FASTQs compatible with 10x pipelines."""
+
+toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
+
+source_urls = ['https://github.com/10XGenomics/bamtofastq/archive/refs/tags']
+sources = [{'download_filename': 'v%(version)s.tar.gz', 'filename': SOURCE_TAR_GZ}]
+
+builddependencies = [
+    ('binutils', '2.40'),
+    ('Rust', '1.75.0'),
+    # ('CMake', '3.20.1'),
+]
+
+dependencies = [('bzip2', '1.0.8')]
+
+crates = [
+    ('addr2line', '0.17.0'),
+    ('adler', '1.0.2'),
+    ('aho-corasick', '0.7.18'),
+    ('anyhow', '1.0.53'),
+    ('autocfg', '1.0.1'),
+    ('backtrace', '0.3.63'),
+    ('bincode', '1.3.3'),
+    ('bio-types', '0.12.0'),
+    ('bitflags', '1.3.2'),
+    ('bstr', '0.2.17'),
+    ('byteorder', '1.4.3'),
+    ('bzip2-sys', '0.1.11+1.0.8'),
+    ('cc', '1.0.71'),
+    ('cfg-if', '1.0.0'),
+    ('cmake', '0.1.45'),
+    ('crc32fast', '1.2.1'),
+    ('crossbeam-channel', '0.5.1'),
+    ('crossbeam-utils', '0.8.5'),
+    ('csv', '1.1.6'),
+    ('csv-core', '0.1.10'),
+    ('curl-sys', '0.4.49+curl-7.79.1'),
+    ('custom_derive', '0.1.7'),
+    ('derive-new', '0.5.9'),
+    ('docopt', '1.1.1'),
+    ('either', '1.6.1'),
+    ('fastrand', '1.7.0'),
+    ('flate2', '1.0.22'),
+    ('form_urlencoded', '1.0.1'),
+    ('fs-utils', '1.1.4'),
+    ('gimli', '0.26.0'),
+    ('glob', '0.3.0'),
+    ('heck', '0.3.3'),
+    ('hts-sys', '2.0.2'),
+    ('idna', '0.2.3'),
+    ('ieee754', '0.2.6'),
+    ('instant', '0.1.12'),
+    ('itertools', '0.10.3'),
+    ('itoa', '0.4.8'),
+    ('jobserver', '0.1.24'),
+    ('lazy_static', '1.4.0'),
+    ('libc', '0.2.103'),
+    ('libdeflate-sys', '0.5.0'),
+    ('libz-sys', '1.1.3'),
+    ('linear-map', '1.2.0'),
+    ('log', '0.4.14'),
+    ('lz4', '1.23.2'),
+    ('lz4-sys', '1.9.2'),
+    ('lzma-sys', '0.1.17'),
+    ('matches', '0.1.9'),
+    ('memchr', '2.4.1'),
+    ('min-max-heap', '1.3.0'),
+    ('miniz_oxide', '0.4.4'),
+    ('newtype_derive', '0.1.6'),
+    ('object', '0.27.1'),
+    ('openssl-src', '111.16.0+1.1.1l'),
+    ('openssl-sys', '0.9.67'),
+    ('percent-encoding', '2.1.0'),
+    ('pkg-config', '0.3.20'),
+    ('proc-macro2', '1.0.29'),
+    ('quick-error', '1.2.3'),
+    ('quote', '1.0.10'),
+    ('redox_syscall', '0.2.10'),
+    ('regex', '1.5.4'),
+    ('regex-automata', '0.1.10'),
+    ('regex-syntax', '0.6.25'),
+    ('remove_dir_all', '0.5.3'),
+    ('rust-htslib', '0.38.2'),
+    ('rustc-demangle', '0.1.21'),
+    ('rustc_version', '0.1.7'),
+    ('ryu', '1.0.5'),
+    ('semver', '0.1.20'),
+    ('serde', '1.0.135'),
+    ('serde_bytes', '0.11.5'),
+    ('serde_derive', '1.0.135'),
+    ('shardio', '0.8.2'),
+    ('strsim', '0.10.0'),
+    ('strum_macros', '0.20.1'),
+    ('syn', '1.0.80'),
+    ('tempfile', '3.3.0'),
+    ('thiserror', '1.0.29'),
+    ('thiserror-impl', '1.0.29'),
+    ('tinyvec', '1.5.0'),
+    ('tinyvec_macros', '0.1.0'),
+    ('unicode-bidi', '0.3.7'),
+    ('unicode-normalization', '0.1.19'),
+    ('unicode-segmentation', '1.8.0'),
+    ('unicode-xid', '0.2.2'),
+    ('url', '2.2.2'),
+    ('vcpkg', '0.2.15'),
+    ('winapi', '0.3.9'),
+    ('winapi-i686-pc-windows-gnu', '0.4.0'),
+    ('winapi-x86_64-pc-windows-gnu', '0.4.0'),
+]
+
+sanity_check_paths = {
+    'files': ['bin/%(namelower)s'],
+    'dirs': [],
+}
+
+sanity_check_commands = ["%(namelower)s --help"]
+
+moduleclass = 'bio'