voto-ocean-knowledge · callumrollo · Mar 4, 2024 · Mar 4, 2024 · Mar 4, 2024
diff --git a/mission_yaml/SEA44_M89.yml b/mission_yaml/SEA44_M89.yml
@@ -0,0 +1,377 @@
+metadata:
+  acknowledgement: This study used data collected and made freely available by Voice
+    of the Ocean Foundation (https://voiceoftheocean.org) accessed from https://erddap.observations.voiceoftheocean.org/erddap/index.html
+  institution: Voice of the Ocean Foundation
+  license: Creative Commons Attribution 4.0 (https://creativecommons.org/licenses/by/4.0/)
+    This study used data collected and made freely available by Voice of the Ocean
+    Foundation (https://voiceoftheocean.org) accessed from https://erddap.observations.voiceoftheocean.org/erddap/index.html
+  format_version: IOOS_Glider_NetCDF_v2.0.nc
+  glider_model: SeaExplorer
+  glider_instrument_name: seaexplorer
+  keywords: AUVS, Autonomous Underwater Vehicles, Oceans, Ocean Pressure, Water Pressure,
+    Ocean Temperature, Water Temperature, Salinity/Density, Conductivity, Density,
+    Salinity
+  keywords_vocabulary: GCMD Science Keywords
+  metadata_link: http://cfconventions.org/cf-conventions/v1.6.0/cf-conventions.html
+  Metadata_Conventions: CF-1.6, Unidata Dataset Discovery v1.0
+  naming_authority: Voice of the Ocean Foundation
+  platform: SeaExplorer Glider
+  processing_level: Data provided as is with no expressed or implied assurance of
+    quality assurance or quality control. L0
+  publisher_email: [email protected]
+  publisher_name: Callum Rollo
+  publisher_url: https://voiceoftheocean.org
+  references: created with pyglider https://github.com/c-proof/pyglider
+  source: Observational data from a profiling glider.
+  standard_name_vocabulary: CF STandard Name Table v49
+  sea_name: Baltic
+  transmission_system: IRIDIUM
+  glider_name: Martorn
+  glider_serial: '44'
+  wmo_id: '6801672'
+  comment: .nan
+  contributor_name: Callum Rollo, Louise Biddle, Olle Petersson, Aleksandra Mazur,
+    Marcus Melin, Gunnar Johnsson, Andrew Birkett, Chiara Monforte
+  contributor_role: Data Processor, PI, Head of Operations, Glider Technician, Glider
+    Technician, Glider Technician, Glider Technician, Glider Pilot
+  creator_email: [email protected]
+  creator_name: Callum Rollo
+  creator_url: https://observations.voiceoftheocean.org
+  deployment_id: '89'
+  deployment_name: SAMBA
+  project: SAMBA
+  project_url: https://voiceoftheocean.org/samba-smart-autonomous-monitoring-of-the-baltic-sea/
+  summary: ' Part of SAMBA continuous monitoring'
+glider_devices:
+  altimeter:
+    make: UNKNOWN
+    model: UNKNOWN
+    serial: '53'
+  ctd:
+    make: RBR
+    model: legato
+    serial: '205048'
+    long_name: RBR legato CTD
+    make_model: RBR legato CTD
+    factory_calibrated: 'Yes'
+    calibration_date: '2023-11-09'
+  optics:
+    make: Wetlabs
+    model: FLBBPC
+    serial: '6597'
+    long_name: Wetlabs ECO Puck FLBBPC
+    make_model: Wetlabs FLBBPC
+    factory_calibrated: 'Yes'
+    calibration_date: '2020-12-22'
+    calibration_parameters:
+      Chl_DarkCounts: 46
+      Chl_SF: 0.0072
+      PC_DarkCounts: 45
+      PC_SF: 0.0386
+      SIG_DarkCounts: 45
+      SIG_SF: 1.722e-06
+  oxygen:
+    make: JFE Advantech
+    model: AROD-FT
+    serial: 0058
+    long_name: JFE Advantech RINKO-FT
+    make_model: JFE Advantech AROD_FT
+    factory_calibrated: 'Yes'
+    calibration_date: '2023-08-26'
+netcdf_variables:
+  keep_variables:
+  - temperature
+  - oxygen_concentration
+  - chlorophyll
+  timebase:
+    source: NAV_LATITUDE
+  time:
+    source: time
+    long_name: Time
+    standard_name: time
+    calendar: gregorian
+    units: seconds since 1970-01-01T00:00:00Z
+    axis: T
+    observation_type: measured
+    coordinates: time depth latitude longitude
+  latitude:
+    source: NAV_LATITUDE
+    long_name: latitude
+    standard_name: latitude
+    units: degrees_north
+    axis: Y
+    coordinates: time depth latitude longitude
+    conversion: nmea2deg
+    comment: Estimated between surface fixes
+    observation_type: measured
+    platform: platform
+    reference: WGS84
+    valid_max: '90.0'
+    valid_min: '-90.0'
+    coordinate_reference_frame: urn:ogc:crs:EPSG::4326
+  longitude:
+    source: NAV_LONGITUDE
+    long_name: longitude
+    standard_name: longitude
+    units: degrees_east
+    axis: X
+    coordinates: time depth latitude longitude
+    conversion: nmea2deg
+    comment: Estimated between surface fixes
+    observation_type: measured
+    platform: platform
+    reference: WGS84
+    valid_max: '180.0'
+    valid_min: '-180.0'
+    coordinate_reference_frame: urn:ogc:crs:EPSG::4326
+  nav_state:
+    source: NAV_RESOURCE
+    long_name: seaexplorer navigation state
+    standard_name: navigation_state
+    units: None
+    coordinates: time depth latitude longitude
+  heading:
+    source: Heading
+    long_name: glider heading angle
+    standard_name: platform_orientation
+    units: degrees
+    coordinates: time depth latitude longitude
+  pitch:
+    source: Pitch
+    long_name: glider pitch angle
+    standard_name: platform_pitch_angle
+    units: degrees
+    coordinates: time depth latitude longitude
+  roll:
+    source: Roll
+    long_name: glider roll angle
+    standard_name: platform_roll_angle
+    units: degrees
+    coordinates: time depth latitude longitude
+  dive_num:
+    source: fnum
+    long_name: glider dive number from original SeaExplorer filename
+    standard_name: dive_number
+    units: None
+    coordinates: time depth latitude longitude
+  security_level:
+    source: SecurityLevel
+    long_name: security level
+    standard_name: security_level
+    units: None
+    coordinates: time depth latitude longitude
+  declination:
+    source: Declination
+    long_name: declination
+    standard_name: declination
+    units: None
+    coordinates: time depth latitude longitude
+  internal_temperature:
+    source: Temperature
+    long_name: internal temperature
+    standard_name: internal_temperature
+    units: Celsius
+    coordinates: time depth latitude longitude
+  internal_pressure:
+    source: Pa
+    long_name: internal pressure
+    standard_name: internal_pressure
+    units: Pa
+    coordinates: time depth latitude longitude
+  desired_heading:
+    source: DesiredH
+    long_name: glider desired heading angle
+    standard_name: platform_desired_orientation
+    units: degrees
+    coordinates: time depth latitude longitude
+  ballast_cmd:
+    source: BallastCmd
+    long_name: glider ballast command
+    standard_name: ballast_command
+    units: ml
+    coordinates: time depth latitude longitude
+  ballast_pos:
+    source: BallastPos
+    long_name: glider ballast position
+    standard_name: ballast_position
+    units: ml
+    coordinates: time depth latitude longitude
+  linear_cmd:
+    source: LinCmd
+    long_name: glider linear command
+    standard_name: linear_command
+    units: cm
+    coordinates: time depth latitude longitude
+  linear_pos:
+    source: LinPos
+    long_name: glider linear position
+    standard_name: linear_position
+    units: cm
+    coordinates: time depth latitude longitude
+  angular_cmd:
+    source: AngCmd
+    long_name: glider angular command
+    standard_name: angular_command
+    units: degrees
+    coordinates: time depth latitude longitude
+  angular_pos:
+    source: AngPos
+    long_name: glider angular position
+    standard_name: angular_position
+    units: degrees
+    coordinates: time depth latitude longitude
+  voltage:
+    source: Voltage
+    long_name: glider voltage
+    standard_name: platform_voltage
+    units: V
+    coordinates: time depth latitude longitude
+  altimeter:
+    source: Altitude
+    long_name: glider altimeter reading
+    standard_name: glider_altimeter_reading
+    units: m
+    coordinates: time depth latitude longitude
+  dead_reckoning:
+    source: DeadReckoning
+    long_name: dead reckoning
+    standard_name: dead_reckoning
+    units: None
+    coordinates: time depth latitude longitude
+  nav_resource:
+    source: NAV_RESOURCE
+    long_name: nav resource
+    standard_name: nav_resource
+    units: None
+    coordinates: time depth latitude longitude
+  conductivity:
+    source: LEGATO_CONDUCTIVITY
+    long_name: water conductivity
+    standard_name: sea_water_electrical_conductivity
+    units: mS cm-1
+    coordinates: time depth latitude longitude
+    instrument: instrument_ctd
+    valid_min: '0.'
+    valid_max: '85.'
+    observation_type: measured
+    accuracy: '0.003'
+    resolution: '0.001'
+  temperature:
+    source: LEGATO_TEMPERATURE
+    long_name: water temperature
+    standard_name: sea_water_temperature
+    units: Celsius
+    coordinates: time depth latitude longitude
+    instrument: instrument_ctd
+    valid_min: '-5'
+    valid_max: '42'
+    observation_type: measured
+    accuracy: '0.002'
+    resolution: '0.00005'
+  pressure:
+    source: LEGATO_PRESSURE
+    long_name: water pressure
+    standard_name: sea_water_pressure
+    units: dbar
+    coordinates: time depth latitude longitude
+    valid_min: '0'
+    valid_max: '1000'
+    positive: down
+    reference_datum: sea-surface
+    instrument: instrument_ctd
+    observation_type: measured
+    accuracy: '0.5'
+    resolution: '0.01'
+    comment: ctd pressure sensor
+  salinity:
+    source: LEGATO_SALINITY
+    long_name: water salinity
+    standard_name: sea_water_salinity
+    units: PSU
+    coordinates: time depth latitude longitude
+    instrument: instrument_ctd
+    valid_min: '0.'
+    valid_max: '50.'
+    observation_type: calculated
+    accuracy: '0.02'
+    resolution: '0.01'
+  chlorophyll:
+    source: FLBBPC_CHL_SCALED
+    long_name: chlorophyll
+    standard_name: concentration_of_chlorophyll_in_sea_water
+    units: mg m-3
+    coordinates: time depth latitude longitude
+    instrument: instrument_flourometer
+    valid_min: '0.'
+    valid_max: '50.'
+    observation_type: calculated
+    sensitivity: '0.025'
+  chlorophyll_raw:
+    source: FLBBPC_CHL_COUNT
+    long_name: raw chlorophyll
+    standard_name: raw_chlorophyll_in_sea_water
+    units: counts
+    coordinates: time depth latitude longitude
+    instrument: instrument_flourometer
+  phycocyanin:
+    source: FLBBPC_PC_SCALED
+    long_name: phycocyanin
+    standard_name: concentration_of_phycocyanin_in_sea_water
+    units: mg m-3
+    coordinates: time depth latitude longitude
+    instrument: instrument_flourometer
+    valid_min: '0.'
+    valid_max: '175.'
+    observation_type: calculated
+    sensitivity: '0.09'
+  phycocyanin_raw:
+    source: FLBBPC_PC_COUNT
+    long_name: raw phycocyanin
+    standard_name: raw_phycocyanin_in_sea_water
+    units: counts
+    coordinates: time depth latitude longitude
+    instrument: instrument_flourometer
+  backscatter_scaled:
+    source: FLBBPC_BB_700_SCALED
+    long_name: "700 nm \u03B2 total volume scattering coefficient at 117 degree angle"
+    standard_name: 700_nm_wavelength_total_volume_scattering_coefficient
+    units: m-1 sr-1
+    coordinates: time depth latitude longitude
+    instrument: instrument_scatterometer
+    valid_min: '0.'
+    valid_max: '3.'
+    observation_type: calculated
+    sensitivity: '0.002'
+  backscatter_raw:
+    source: FLBBPC_BB_700_COUNT
+    long_name: raw 700 nm wavelength backscatter
+    standard_name: raw_700_nm_wavelength_backscatter_in_sea_water
+    units: counts
+    coordinates: time depth latitude longitude
+    instrument: instrument_scatterometer
+  oxygen_concentration:
+    source: AROD_FT_DO
+    long_name: oxygen concentration
+    standard_name: mole_concentration_of_dissolved_molecular_oxygen_in_sea_water
+    units: mmol m-3
+    coordinates: time depth latitude longitude
+    correct_oxygen: 'True'
+    reference_salinity: '0'
+    instrument: instrument_phosphorescence
+    valid_min: '0.'
+    valid_max: '425.'
+    observation_type: calculated
+    accuracy: 2% or 2.0
+    resolution: '0.01'
+  temperature_oxygen:
+    source: AROD_FT_TEMP
+    long_name: oxygen sensor temperature
+    standard_name: temperature_of_sensor_for_oxygen_in_sea_water
+    units: Celsius
+    coordinates: time depth latitude longitude
+    instrument: instrument_thermistor
+    valid_min: '-3.'
+    valid_max: '45.'
+    observation_type: measured
+    accuracy: '0.01'
+    resolution: '0.001'
diff --git a/mission_yaml/SEA69_M25.yml b/mission_yaml/SEA69_M25.yml
@@ -29,7 +29,9 @@ metadata:
   glider_name: Kalmus
   glider_serial: '69'
   wmo_id: '6801506'
-  comment: .nan
+  comment: Altitude set to 2m for the entire mission duration . Zt/zs set to 2m for
+    most of the mission but often increased to 15 or 20m when the glider struggled
+    with strong currents. Glider struggled with strong currents so it was often outside the desired transect
   contributor_name: Callum Rollo, Louise Biddle, Olle Petersson, Aleksandra Mazur,
     Marcus Melin, Gunnar Johnsson, Andrew Birkett, Chiara Monforte
   contributor_role: Data Processor, PI, Head of Operations, Glider Technician, Glider