Skip to content

vg 1.56.0 - Collalto
Compare
Choose a tag to compare
@adamnovak adamnovak released this 08 Apr 20:31
· 337 commits to master since this release
v1.56.0
963d8d9
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Learn about vigilant mode.

Download for Linux

Don't forget to mark the static binary executable:

chmod +x vg

Docker Image: quay.io/vgteam/vg:v1.56.0

Buildable Source Tarball: vg-v1.56.0.tar.gz

Includes source for vg and all submodules. Use this instead of Github's "Source Code" downloads; those will not build as they do not include code for bundled dependencies that the vg build process needs.

This release includes:

  • vg GFA output should now use P lines instead of W lines when nonzero phase blocks are present, to allow them to be round-tripped.
  • vg call -c and -C options changed to limit search based on all alleles and not just reference allele. This means these options work much better in practice to prevent vg call from being lost in giant snarls.
  • --progress option added to vg call
  • Paths with subranges on phase block 0 (or on haplotype paths without explicit phase blocks) can now be saved to GFA again.
  • vg now supports reading from indexed GAF files of reads in many places where an indexed GAM file can be used

Updated Submodules

  • htslib
Assets 5
Loading