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vg 1.33.0 - Moscona
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@adamnovak adamnovak released this 24 May 19:14
· 3050 commits to master since this release
v1.33.0
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Download for Linux

Don't forget to mark the static binary executable:

chmod +x vg

Docker Image: quay.io/vgteam/vg:v1.33.0

Buildable Source Tarball: vg-v1.33.0.tar.gz

Includes source for vg and all submodules. Use this instead of Github's "Source Code" downloads; those will not build as they do not include code for bundled dependencies that the vg build process needs.

This release includes:

  • vg call -a fixed to not include redundant base at beginning of alleles
  • "path end" field corrected in GAF output
  • VG now supports ARM Macs.
  • vg recalibrate has been removed (deprecated since 1.30.0).
  • vg find kmer output also lists samples/phases for the matching haplotypes.
  • vg's GAF parser now reads cg cigar strings when no cs cigars found so, for example, vg pack can now properly load a GAF from GraphAligner.
  • vg gbwt -R now removes multiple samples correctly.
  • vg deconstruct can more easily use reference paths (or subpaths) from the GBWT
  • vg mcmc now accepts non-vg::VG graphs as input
  • vg deconstruct fixed to not write sites with no alt alleles when genotyping with a gbwt

New and Updated Submodules

The DYNAMIC, gbwt, gbwtgraph, gcsa2, libhandlegraph, libvgio, and vcflibsubmodules have been updated. Thehtslibandtabixppsubmodules have been added. Thevowpal_wabbit` submodule has been removed.

Make sure to git submodule sync and git submodule update --init --recursive if building from source.

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