Skip to content

vg 1.20.0 - Ginestra
Compare
Choose a tag to compare
@adamnovak adamnovak released this 04 Nov 19:51
· 6022 commits to master since this release
v1.20.0
2724fc4
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.

Download for Linux

Don't forget to mark the static binary executable:

chmod +x vg

Docker Image: quay.io/vgteam/vg:v1.20.0

Buildable Source Tarball: vg-v1.20.0.tar.gz

Includes source for vg and all submodules. Use this instead of Github's "Source Code" downloads; those will not build as they do not include code for bundled dependencies that the vg build process needs.

This release includes:

  • Faster and more efficient minimizer finding and clustering in vg gaffe
  • Memory usage optimizations in vg rna
  • vg call bugfixes for cyclic graphs
  • Improved giraffe-wrangler.sh script
  • Improvements to tail anchor synthesis in vg mpmap that should resolve some slowdowns
  • vg rna bugfixes for variants at the ends of exons
  • Better use of overlays in vg call
  • BED-based extraction in vg find
  • High-degree node removal in vg prune
  • Bugfix for vg call -b parsing issue
  • New -s option to vg augment to ignore out-of-graph alignments
  • Binaries and Dockers now built for Nehalem architecture and above; AVX1 instruction support should no longer be required
  • Faster packing with vg pack
  • Ability to build a GBWT from sampled local haplotypes rather than a whole haplotype database
  • Coverage threshold for faster vg augment
  • Distance indexing with vg index now supports any graph filetype, not just .vg.

New and Updated Submodules

The BBHash submodule has been added.

The gbwt, gbwtgraph, libbdsg, libhandlegraph, and libvgio submodules have been updated.

Make sure to git submodule update --init --recursive if building from source.

Assets 4
Loading