update commons-cli & add includeTag option

[Nicole00]

1. update commons-cli version from 1.4 to 1.2, no need to specify the commons-cli dependency jar in submit command.
2. add includeTag option for testing migrate.

[codecov-commenter]

Codecov Report

Patch and project coverage have no change.

Comparison is base (e02c06d) 31.31% compared to head (cc297b9) 31.31%.

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Additional details and impacted files

@@            Coverage Diff            @@
##             master      #97   +/-   ##
=========================================
  Coverage     31.31%   31.31%           
  Complexity       79       79           
=========================================
  Files            30       30           
  Lines          1536     1536           
  Branches        241      241           
=========================================
  Hits            481      481           
  Misses          985      985           
  Partials         70       70           

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