Merge pull request #94 from niemasd/master

Create Dockerfile

Dockerfile

@@ -0,0 +1,21 @@
+# Docker image for HIV-TRACE
+FROM ubuntu:20.04
+
+# Set up environment and install dependencies
+RUN apt-get update && apt-get -y upgrade && \
+    DEBIAN_FRONTEND=noninteractive TZ=Etc/UTC apt-get install -y cmake gcc g++ git libcurl4-openssl-dev libssl-dev make python3 python3-pip wget && \
+
+    # Update pip and use it to install Python packages
+    python3 -m pip install --upgrade pip && \
+    pip3 install biopython cython numpy scipy && \
+
+    # Install tn93
+    wget -qO- "https://github.com/veg/tn93/archive/refs/tags/v.1.0.11.tar.gz" | tar -zx && \
+    cd tn93-* && \
+    cmake . && \
+    make install && \
+    cd .. && \
+    rm -rf tn93-* && \
+
+    # Clean up
+    rm -rf ~/.cache /tmp/* ~/.wget-hsts