feat: add support for importing per-case seqvar VCF (#1048)

[holtgrewe]

No description provided.

[github-actions]

deps-report 🔍

Commit scanned: 5163207
ℹ️ Python version 3.10 is used by your project but the latest version is 3.11.

Vulnerable dependencies

1 dependencies have vulnerabilities 😱

Dependency	Advisory	Versions impacted
sqlalchemy	Sqlalchemy 2.0.0b1 avoids leaking cleartext passwords to the open for careless uses of str(engine.URL()) in logs and prints. sqlalchemy/sqlalchemy#8563	<2.0.0b1

Outdated dependencies

39 outdated dependencies found (including 17 outdated major versions)😢

Dependency	Installed version	Latest version
argon2-cffi (transitive)	21.3.0	23.1.0
attrs	21.4.0	23.1.0
billiard (transitive)	3.6.4.0	4.1.0
coverage (dev,transitive)	6.5.0	7.3.1
django	3.2.21	4.2.5
django-clone	4.1.3	5.3.3
mistune (transitive)	2.0.5	3.0.1
pandas	1.5.3	2.1.1
protobuf	3.20.1	4.24.3
pydantic (transitive)	1.10.12	2.4.0
redis	4.6.0	5.0.1
setuptools (transitive)	67.6.1	68.2.2
sphinx (transitive)	6.2.1	7.2.6
sqlalchemy	1.4.49	2.0.21
unidecode (transitive)	0.4.21	1.3.7
urllib3 (transitive)	1.26.16	2.0.5
xlsxwriter	1.4.5	3.1.5

Dependency	Installed version	Latest version
aiobotocore (transitive)	2.5.4	2.6.0
black (dev)	23.1.0	23.9.1
botocore (transitive)	1.31.17	1.31.54
celery (transitive)	5.2.7	5.3.4
django-autocomplete-light (transitive)	3.9.4	3.9.7
django-environ (transitive)	0.10.0	0.11.2
django-iconify (transitive)	0.1.1	0.3
django-postgres-copy	2.3.7	2.7.3
docutils (transitive)	0.18.1	0.20.1
factory-boy (dev)	3.2.1	3.3.0
jedi (dev)	0.17.2	0.19.0
jsonschema	4.17.3	4.19.1
markdown (transitive)	3.4.1	3.4.4
parameterized (dev)	0.8.1	0.9.0
parso (dev,transitive)	0.7.1	0.8.3
requests-http-signature	0.2.0	0.7.1
selenium (dev)	4.12.0	4.13.0
sphinx-rtd-theme (transitive)	1.2.2	1.3.0
traitlets (dev,transitive)	5.10.0	5.10.1
versioneer (transitive)	0.28	0.29
werkzeug (dev)	2.2.3	2.3.7
wheel (transitive)	0.40.0	0.41.2

_Logs

[codecov]

Codecov Report

Merging #1155 (5163207) into main (62416c5) will increase coverage by 0.08%.
The diff coverage is 85.24%.

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #1155      +/-   ##
==========================================
+ Coverage   71.16%   71.25%   +0.08%     
==========================================
  Files         382      383       +1     
  Lines       24209    24267      +58     
  Branches     1565     1565              
==========================================
+ Hits        17229    17291      +62     
+ Misses       6980     6976       -4     

Files	Coverage Δ
cases_files/models.py	100.00% <100.00%> (ø)
cases_import/proto.py	99.56% <100.00%> (ø)
config/common.py	100.00% <100.00%> (ø)
config/settings/base.py	76.82% <100.00%> (+0.09%)	⬆️
cases_import/models/executors.py	93.07% <81.05%> (+1.67%)	⬆️