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feat: adding support for importing samtools/bcftools stats (#1139) #1140

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holtgrewe
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@holtgrewe holtgrewe linked an issue Sep 21, 2023 that may be closed by this pull request
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codecov bot commented Sep 21, 2023

Codecov Report

Patch coverage: 98.50% and project coverage change: +0.43% 🎉

Comparison is base (9792b29) 70.47% compared to head (2b515b2) 70.91%.

Additional details and impacted files
@@            Coverage Diff             @@
##             main    #1140      +/-   ##
==========================================
+ Coverage   70.47%   70.91%   +0.43%     
==========================================
  Files         358      360       +2     
  Lines       23021    23382     +361     
  Branches     1528     1528              
==========================================
+ Hits        16224    16581     +357     
- Misses       6797     6801       +4     
Flag Coverage Δ
nodejs 42.96% <ø> (ø)
python 82.62% <98.50%> (+0.36%) ⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files Changed Coverage Δ
cases_qc/io/utils.py 92.30% <92.30%> (ø)
cases_qc/io/samtools.py 97.31% <97.31%> (ø)
cases_import/models.py 91.50% <100.00%> (+0.60%) ⬆️
cases_qc/io/dragen.py 98.87% <100.00%> (+0.91%) ⬆️
cases_qc/models.py 100.00% <100.00%> (ø)

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@holtgrewe holtgrewe merged commit 7f03b6e into main Sep 21, 2023
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@holtgrewe holtgrewe deleted the 1139-add-support-for-importing-samtools-and-bcftools-qc-statistics branch September 21, 2023 08:45
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Add support for importing samtools (and bcftools) QC statistics
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