fix: seqvars aggregate async runtime error (#519)

[holtgrewe]

Summary by CodeRabbit

• New Features

  • Enhanced command execution with asynchronous handling for improved performance and responsiveness.
  • Asynchronous support for VCF file imports, allowing for more efficient I/O operations.

• Bug Fixes

  • Improved error handling in VCF import processes with more detailed messages and preserved retry logic for transactions.

[coderabbitai]

Caution

Review failed

The pull request is closed.

Walkthrough

The changes introduced in this pull request focus on converting several command executions and functions to asynchronous handling within the Rust codebase. Specifically, the main function in src/main.rs has been updated to await various command executions, including those related to Seqvars and Strucvars. Additionally, the src/seqvars/aggregate/mod.rs file has undergone modifications to support asynchronous operations for VCF file imports, including updates to function signatures and enhanced error handling. These adjustments aim to improve performance and responsiveness in command processing.

Changes

File Path	Change Summary
src/main.rs	Updated command executions for Seqvars and Strucvars to be awaited, including Aggregate, Ingest, Prefilter, and Query commands.
src/seqvars/aggregate/mod.rs	Changed vcf_import and run functions to asynchronous; enhanced error handling and transaction management; maintained retry logic in async flow.

Poem

In the land of code where rabbits play,
Asynchronous hops brighten the day!
Commands now await, like stars in the night,
VCF imports dance, oh what a delight!
With every change, our code takes flight,
Hooray for the updates, all feels just right! 🐇✨

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[codecov]

Codecov Report

Attention: Patch coverage is 0% with 10 lines in your changes missing coverage. Please review.

Project coverage is 71%. Comparing base (dc7ab84) to head (bf279aa).
Report is 1 commits behind head on main.

Files with missing lines	Patch %	Lines
src/seqvars/aggregate/mod.rs	0%	9 Missing ⚠️
src/main.rs	0%	1 Missing ⚠️

Additional details and impacted files

@@          Coverage Diff          @@
##            main    #520   +/-   ##
=====================================
  Coverage     71%     71%           
=====================================
  Files         43      43           
  Lines      11841   11830   -11     
=====================================
  Hits        8511    8511           
+ Misses      3330    3319   -11     

Files with missing lines	Coverage Δ
src/main.rs	0% <0%> (ø)
src/seqvars/aggregate/mod.rs	40% <0%> (+1%)	⬆️