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seqvars aggregate fails with nested async runtimes errors #519

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holtgrewe opened this issue Oct 30, 2024 · 0 comments · Fixed by #520
Closed

seqvars aggregate fails with nested async runtimes errors #519

holtgrewe opened this issue Oct 30, 2024 · 0 comments · Fixed by #520
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@holtgrewe
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Describe the bug
seqvars annotate fails with

2024-10-30T08:25:39.359810Z  INFO Opening RocksDB...
2024-10-30T08:25:39.405596Z  INFO   writing meta information
2024-10-30T08:25:39.408554Z  INFO ... done opening RocksDB
2024-10-30T08:25:39.408561Z  INFO Importing VCF files ...
thread 'main' panicked at src/seqvars/aggregate/mod.rs:340:18:
Cannot start a runtime from within a runtime. This happens because a function (like `block_on`) attempted to block the current thread while the thread is being used to drive asynchronous tasks.
note: run with `RUST_BACKTRACE=1` environment variable to display a backtrace
... done executing job

To Reproduce
Run the command.

Expected behavior
It should run through.

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N/A

Additional context
N/A
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fix: seqvars aggregate async runtime error (#519) varfish-org/varfish-server-worker
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@holtgrewe