feat!: refactory query schema to use protobuf (#374)

[jakibaki]

Solves #374 and #375. Continuation of #398.

[codecov]

Codecov Report

Attention: Patch coverage is 89.31075% with 183 lines in your changes missing coverage. Please review.

Project coverage is 75%. Comparing base (71de822) to head (2a570ee).
Report is 3 commits behind head on main.

Files	Patch %	Lines
src/seqvars/query/interpreter/genotype.rs	90%	48 Missing ⚠️
src/seqvars/query/schema/query.rs	95%	30 Missing ⚠️
src/seqvars/query/mod.rs	68%	29 Missing ⚠️
src/seqvars/query/output/variant_related.rs	0%	20 Missing ⚠️
src/seqvars/query/interpreter/clinvar.rs	0%	11 Missing ⚠️
src/seqvars/query/interpreter/regions_allowlist.rs	0%	11 Missing ⚠️
src/seqvars/query/schema/data.rs	93%	11 Missing ⚠️
src/seqvars/query/interpreter/quality.rs	92%	10 Missing ⚠️
src/seqvars/query/annonars.rs	0%	6 Missing ⚠️
src/seqvars/query/interpreter/mod.rs	0%	5 Missing ⚠️
... and 2 more

Additional details and impacted files

@@         Coverage Diff          @@
##           main   #419    +/-   ##
====================================
- Coverage    80%    75%    -6%     
====================================
  Files        43     44     +1     
  Lines      6329   7180   +851     
====================================
+ Hits       5109   5432   +323     
- Misses     1220   1748   +528     

Files	Coverage Δ
src/seqvars/ingest/header.rs	84% <100%> (+<1%)	⬆️
src/seqvars/ingest/mod.rs	87% <100%> (-1%)	⬇️
src/seqvars/prefilter/mod.rs	85% <ø> (-1%)	⬇️
src/seqvars/query/interpreter/consequences.rs	92% <100%> (ø)
src/seqvars/query/interpreter/frequency.rs	100% <100%> (ø)
src/seqvars/query/interpreter/genes_allowlist.rs	100% <100%> (ø)
src/seqvars/query/output/gene_related.rs	0% <ø> (-94%)	⬇️
src/seqvars/query/sorting.rs	0% <ø> (-50%)	⬇️
src/strucvars/query/mod.rs	54% <ø> (-1%)	⬇️
src/strucvars/txt_to_bin/masked.rs	90% <ø> (-4%)	⬇️
... and 13 more

... and 11 files with indirect coverage changes