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Is your feature request related to a problem? Please describe.
Between seqvars ingest and seqvars query, it would be useful to have a command that downfilters the variants.
Describe the solution you'd like
Implement seqvars prefilter that takes seqvars ingest output and only keeps variants with
population frequency
exon distance
are below a threshold given on the command line. This allows to generate a number of prefiltered files after seqvars ingest which greatly reduce the I/O amount for queries that only consider <1% variants and <200bp exon distance anyway.
Describe alternatives you've considered
N/A
Additional context
N/A
The text was updated successfully, but these errors were encountered:
Is your feature request related to a problem? Please describe.
Between
seqvars ingest
andseqvars query
, it would be useful to have a command that downfilters the variants.Describe the solution you'd like
Implement
seqvars prefilter
that takesseqvars ingest
output and only keeps variants withare below a threshold given on the command line. This allows to generate a number of prefiltered files after
seqvars ingest
which greatly reduce the I/O amount for queries that only consider<1%
variants and<200bp
exon distance anyway.Describe alternatives you've considered
N/A
Additional context
N/A
The text was updated successfully, but these errors were encountered: