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fix: remove extra consequence from protobuf
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holtgrewe committed Sep 3, 2024
1 parent 13a106a commit 0b409cd
Showing 1 changed file with 19 additions and 21 deletions.
40 changes: 19 additions & 21 deletions protos/varfish/v1/seqvars/query.proto
Original file line number Diff line number Diff line change
Expand Up @@ -201,52 +201,50 @@ enum Consequence {
CONSEQUENCE_CONSERVATIVE_INFRAME_INSERTION = 12;
// Conservative inframe deletion
CONSEQUENCE_CONSERVATIVE_INFRAME_DELETION = 13;
// In-frame indel.
CONSEQUENCE_IN_FRAME_INDEL = 14;
// Missense variant
CONSEQUENCE_MISSENSE_VARIANT = 15;
CONSEQUENCE_MISSENSE_VARIANT = 14;
/*
* low impact
*/
// Splice donor 5th base variant.
CONSEQUENCE_SPLICE_DONOR_FIFTH_BASE_VARIANT = 16;
CONSEQUENCE_SPLICE_DONOR_FIFTH_BASE_VARIANT = 15;
// Splice region variant.
CONSEQUENCE_SPLICE_REGION_VARIANT = 17;
CONSEQUENCE_SPLICE_REGION_VARIANT = 16;
// Splice donor region variant.
CONSEQUENCE_SPLICE_DONOR_REGION_VARIANT = 18;
CONSEQUENCE_SPLICE_DONOR_REGION_VARIANT = 17;
// Splice polypyrimidine tract variant.
CONSEQUENCE_SPLICE_POLYPYRIMIDINE_TRACT_VARIANT = 19;
CONSEQUENCE_SPLICE_POLYPYRIMIDINE_TRACT_VARIANT = 18;
// Start retained variant.
CONSEQUENCE_START_RETAINED_VARIANT = 20;
CONSEQUENCE_START_RETAINED_VARIANT = 19;
// Stop retained variant.
CONSEQUENCE_STOP_RETAINED_VARIANT = 21;
CONSEQUENCE_STOP_RETAINED_VARIANT = 20;
// Synonymous variant.
CONSEQUENCE_SYNONYMOUS_VARIANT = 22;
CONSEQUENCE_SYNONYMOUS_VARIANT = 21;
/*
* modifier
*/
// Coding sequence variant.
CONSEQUENCE_CODING_SEQUENCE_VARIANT = 23;
CONSEQUENCE_CODING_SEQUENCE_VARIANT = 22;
// 5' UTR exon variant.
CONSEQUENCE_FIVE_PRIME_UTR_EXON_VARIANT = 24;
CONSEQUENCE_FIVE_PRIME_UTR_EXON_VARIANT = 23;
// 5' UTR intron variant.
CONSEQUENCE_FIVE_PRIME_UTR_INTRON_VARIANT = 25;
CONSEQUENCE_FIVE_PRIME_UTR_INTRON_VARIANT = 24;
// 3' UTR exon variant.
CONSEQUENCE_THREE_PRIME_UTR_EXON_VARIANT = 26;
CONSEQUENCE_THREE_PRIME_UTR_EXON_VARIANT = 25;
// 3' UTR intron variant.
CONSEQUENCE_THREE_PRIME_UTR_INTRON_VARIANT = 27;
CONSEQUENCE_THREE_PRIME_UTR_INTRON_VARIANT = 26;
// Non-coding transcript exon variant.
CONSEQUENCE_NON_CODING_TRANSCRIPT_EXON_VARIANT = 28;
CONSEQUENCE_NON_CODING_TRANSCRIPT_EXON_VARIANT = 27;
// Non-coding transcript intron variant.
CONSEQUENCE_NON_CODING_TRANSCRIPT_INTRON_VARIANT = 29;
CONSEQUENCE_NON_CODING_TRANSCRIPT_INTRON_VARIANT = 28;
// Upstream gene variant.
CONSEQUENCE_UPSTREAM_GENE_VARIANT = 30;
CONSEQUENCE_UPSTREAM_GENE_VARIANT = 29;
// Downstream gene variant.
CONSEQUENCE_DOWNSTREAM_GENE_VARIANT = 31;
CONSEQUENCE_DOWNSTREAM_GENE_VARIANT = 30;
// Intergenic variant.
CONSEQUENCE_INTERGENIC_VARIANT = 32;
CONSEQUENCE_INTERGENIC_VARIANT = 31;
// Intron variant.
CONSEQUENCE_INTRON_VARIANT = 33;
CONSEQUENCE_INTRON_VARIANT = 32;
}

// Consequence-related filter settings.
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