CI #550
holtgrewerust.yml
on: push
Formatting
28s
Linting
11m 4s
Testing
16m 48s
Annotations
31 warnings
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Formatting
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions-rs/toolchain@v1, arduino/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Formatting
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Formatting
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Formatting
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Formatting
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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this expression creates a reference which is immediately dereferenced by the compiler:
src/seqvars/prefilter/mod.rs#L165
warning: this expression creates a reference which is immediately dereferenced by the compiler
--> src/seqvars/prefilter/mod.rs:165:43
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165 | ... .write_record(&input_header, &input_record)
| ^^^^^^^^^^^^^ help: change this to: `input_header`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow
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this loop could be written as a `while let` loop:
src/seqvars/prefilter/mod.rs#L154
warning: this loop could be written as a `while let` loop
--> src/seqvars/prefilter/mod.rs:154:5
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154 | / loop {
155 | | if let Some(input_record) = records.next() {
156 | | let input_record = input_record?;
157 | |
... |
180 | | }
181 | | }
| |_____^ help: try: `while let Some(input_record) = records.next() { .. }`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#while_let_loop
= note: `#[warn(clippy::while_let_loop)]` on by default
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this expression creates a reference which is immediately dereferenced by the compiler:
src/seqvars/prefilter/mod.rs#L109
warning: this expression creates a reference which is immediately dereferenced by the compiler
--> src/seqvars/prefilter/mod.rs:109:44
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109 | let gnomad_genomes_hemi = get_info_i32(&input_record, "gnomad_genomes_hemi")
| ^^^^^^^^^^^^^ help: change this to: `input_record`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow
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this expression creates a reference which is immediately dereferenced by the compiler:
src/seqvars/prefilter/mod.rs#L107
warning: this expression creates a reference which is immediately dereferenced by the compiler
--> src/seqvars/prefilter/mod.rs:107:43
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107 | let gnomad_genomes_het = get_info_i32(&input_record, "gnomad_genomes_het")
| ^^^^^^^^^^^^^ help: change this to: `input_record`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow
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this expression creates a reference which is immediately dereferenced by the compiler:
src/seqvars/prefilter/mod.rs#L105
warning: this expression creates a reference which is immediately dereferenced by the compiler
--> src/seqvars/prefilter/mod.rs:105:43
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105 | let gnomad_genomes_hom = get_info_i32(&input_record, "gnomad_genomes_hom")
| ^^^^^^^^^^^^^ help: change this to: `input_record`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow
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this expression creates a reference which is immediately dereferenced by the compiler:
src/seqvars/prefilter/mod.rs#L103
warning: this expression creates a reference which is immediately dereferenced by the compiler
--> src/seqvars/prefilter/mod.rs:103:42
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103 | let gnomad_genomes_an = get_info_i32(&input_record, "gnomad_genomes_an")
| ^^^^^^^^^^^^^ help: change this to: `input_record`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow
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this expression creates a reference which is immediately dereferenced by the compiler:
src/seqvars/prefilter/mod.rs#L94
warning: this expression creates a reference which is immediately dereferenced by the compiler
--> src/seqvars/prefilter/mod.rs:94:43
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94 | let gnomad_exomes_hemi = get_info_i32(&input_record, "gnomad_exomes_hemi")
| ^^^^^^^^^^^^^ help: change this to: `input_record`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow
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this expression creates a reference which is immediately dereferenced by the compiler:
src/seqvars/prefilter/mod.rs#L92
warning: this expression creates a reference which is immediately dereferenced by the compiler
--> src/seqvars/prefilter/mod.rs:92:42
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92 | let gnomad_exomes_het = get_info_i32(&input_record, "gnomad_exomes_het")
| ^^^^^^^^^^^^^ help: change this to: `input_record`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow
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this expression creates a reference which is immediately dereferenced by the compiler:
src/seqvars/prefilter/mod.rs#L90
warning: this expression creates a reference which is immediately dereferenced by the compiler
--> src/seqvars/prefilter/mod.rs:90:42
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90 | let gnomad_exomes_hom = get_info_i32(&input_record, "gnomad_exomes_hom")
| ^^^^^^^^^^^^^ help: change this to: `input_record`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow
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this expression creates a reference which is immediately dereferenced by the compiler:
src/seqvars/prefilter/mod.rs#L88
warning: this expression creates a reference which is immediately dereferenced by the compiler
--> src/seqvars/prefilter/mod.rs:88:41
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88 | let gnomad_exomes_an = get_info_i32(&input_record, "gnomad_exomes_an")
| ^^^^^^^^^^^^^ help: change this to: `input_record`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow
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this expression creates a reference which is immediately dereferenced by the compiler:
src/seqvars/prefilter/mod.rs#L55
warning: this expression creates a reference which is immediately dereferenced by the compiler
--> src/seqvars/prefilter/mod.rs:55:64
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55 | let params: PrefilterParams = serde_json::from_str(¶m)
| ^^^^^^ help: change this to: `param`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow
= note: `#[warn(clippy::needless_borrow)]` on by default
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single-character string constant used as pattern:
src/seqvars/prefilter/mod.rs#L40
warning: single-character string constant used as pattern
--> src/seqvars/prefilter/mod.rs:40:49
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40 | let path = param.trim_start_matches("@");
| ^^^ help: try using a `char` instead: `'@'`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#single_char_pattern
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single-character string constant used as pattern:
src/seqvars/prefilter/mod.rs#L39
warning: single-character string constant used as pattern
--> src/seqvars/prefilter/mod.rs:39:30
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39 | if param.starts_with("@") {
| ^^^ help: try using a `char` instead: `'@'`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#single_char_pattern
= note: `#[warn(clippy::single_char_pattern)]` on by default
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Linting
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions-rs/toolchain@v1, arduino/[email protected], actions-rs/clippy-check@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Linting
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Linting
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Linting
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Linting
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Testing
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions-rs/toolchain@v1, arduino/[email protected], Swatinem/[email protected], actions-rs/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Testing
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Testing
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Testing
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Testing
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Testing
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Testing
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Testing
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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