feat: implement parsing of clinvar-data-jsonl data (#198) #519

	name: CI

	on:
	push:
	branches:
	- main
	pull_request:
	branches:
	- main

	jobs:
	Formatting:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout repository
	uses: actions/checkout@v2

	- name: Install stable toolchain
	uses: actions-rs/toolchain@v1
	with:
	toolchain: stable
	override: true
	components: rustfmt

	- name: Setup protoc
	uses: arduino/[email protected]
	with:
	repo-token: ${{ secrets.GITHUB_TOKEN }}

	- name: Check format
	run: \|
	cargo fmt -- --check

	Linting:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout repository
	uses: actions/checkout@v2

	- name: Install stable toolchain
	uses: actions-rs/toolchain@v1
	with:
	toolchain: stable
	override: true
	components: clippy

	- name: Setup protoc
	uses: arduino/[email protected]
	with:
	repo-token: ${{ secrets.GITHUB_TOKEN }}

	- name: Lint with clippy
	uses: actions-rs/clippy-check@v1
	with:
	token: ${{ secrets.GITHUB_TOKEN }}

	Testing:
	needs: Formatting
	runs-on: ubuntu-latest
	steps:
	- name: Checkout repository
	uses: actions/checkout@v2
	with:
	lfs: true

	- name: Install stable toolchain
	uses: actions-rs/toolchain@v1
	with:
	toolchain: stable
	override: true

	- name: Setup protoc
	uses: arduino/[email protected]
	with:
	repo-token: ${{ secrets.GITHUB_TOKEN }}

	- uses: Swatinem/[email protected]

	- name: Run cargo-tarpaulin
	uses: actions-rs/[email protected]
	with:
	version: 0.21.0
	args: "--skip-clean -- --test-threads 1"

	- name: Codecov
	uses: codecov/codecov-action@v3
	with:
	verbose: true
	fail_ci_if_error: true
	token: ${{ secrets.CODECOV_TOKEN }}

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