make linter happy

varfish-org · Feb 27, 2024 · 81e776a · 81e776a
1 parent d5a4df2
commit 81e776a
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Showing 2 changed files with 4 additions and 2 deletions.
diff --git a/rules/output/worker/bgdb.smk b/rules/output/worker/bgdb.smk
@@ -65,7 +65,7 @@ rule output_worker_bgdb_exac:
 
 rule output_worker_bgdb_gnomad_exomes_cnv_grch38:
     input:
-        bed=f"output/full/tracks/track-strucvars-gnomad-cnv-grch38-{{version}}+{DV.tracks}/gnomad-cnv.bed.gz"
+        bed=f"output/full/tracks/track-strucvars-gnomad-cnv-grch38-{{version}}+{DV.tracks}/gnomad-cnv.bed.gz",
     output:
         bin=f"output/full/worker/bgdb-gnomad-exomes-cnv-grch38-{{version}}+{PV.worker}/bgdb-gnomad-exomes-cnv-grch38.bin",
         spec=f"output/full/worker/bgdb-gnomad-exomes-cnv-grch38-{{version}}+{PV.worker}/bgdb-gnomad-exomes-cnv-grch38.spec.yaml",
@@ -155,6 +155,7 @@ rule output_worker_bgdb_gnomad_genomes_sv_grch38:
         > {output.spec}
         """
 
+
 rule output_worker_bgdb_dbvar:
     input:
         bed=f"output/full/tracks/track-strucvars-dbvar-{{genome_release}}-{{version}}+{DV.tracks}/dbvar.bed.gz",

diff --git a/rules/work/annos/strucvars/gnomad_sv4.smk b/rules/work/annos/strucvars/gnomad_sv4.smk
@@ -11,6 +11,7 @@ rule annos_strucvars_gnomad_sv_4_grch38_download:  # -- download gnomAD-SV 4.0 f
             https://storage.googleapis.com/gcp-public-data--gnomad/release/4.0/genome_sv/gnomad.v4.0.sv.chr{wildcards.chrom}.vcf.gz
         """
 
+
 rule annos_strucvars_gnomad_sv_4_grch38_process:  # -- process gnomAD-SV v4 files
     input:
         vcf=[
@@ -61,7 +62,7 @@ rule annos_strucvars_gnomad_cnv_4_grch38_download:  # -- download gnomAD-CNV 4.0
 
 rule annos_strucvars_gnomad_cnv_4_grch38_process:  # -- process gnomAD-CNV 4.0 files
     input:
-        vcf="work/download/annos/grch38/strucvars/gnomad_cnv/{version}/gnomad.v{version}.cnv.all.vcf.gz"
+        vcf="work/download/annos/grch38/strucvars/gnomad_cnv/{version}/gnomad.v{version}.cnv.all.vcf.gz",
     output:
         bed=f"output/full/tracks/track-strucvars-gnomad-cnv-grch38-{{version}}+{DV.tracks}/gnomad-cnv.bed.gz",
         bed_md5=f"output/full/tracks/track-strucvars-gnomad-cnv-grch38-{{version}}+{DV.tracks}/gnomad-cnv.bed.gz.md5",