update pytest snapshots for BAMQC

varfish-org · Nov 6, 2024 · e89c3fa · e89c3fa
1 parent d86667d
commit e89c3fa
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/tests/cli/__snapshots__/test_tools.ambr b/tests/cli/__snapshots__/test_tools.ambr
@@ -8,10 +8,10 @@
 # name: test_dragen_to_bam_qc.1
   '''
   case_id	set_id	bam_stats
-  .	.	{"""sample""": {"""summary""": {"""mean coverage""": 35.44, """total target size""": 39036020}, """min_cov_target""": {"""0""": 100.0, """1""": 99.0, """3""": 98.77, """10""": 98.18, """15""": 97.59, """20""": 95.41, """50""": 0.88, """100""": 0.05, """500""": 0.03, """1000""": 0.03, """1500""": 0.03}, """bamstats""": {"""sequences""": 1055691016, """reads duplicated""": 65335430, """insert size average""": 488.03, """insert size standard deviation""": 115.27}}, """sample2""": {"""summary""": {"""mean coverage""": 35.44, """total target size""": 39036020}, """min_cov_target""": {"""0""": 100.0, """1""": 99.0, """3""": 98.77, """10""": 98.18, """15""": 97.59, """20""": 95.41, """50""": 0.88, """100""": 0.05, """500""": 0.03, """1000""": 0.03, """1500""": 0.03}, """bamstats""": {"""sequences""": 1055691016, """reads duplicated""": 65335430, """insert size average""": 488.03, """insert size standard deviation""": 115.27}}}
+  .	.	{"""sample""": {"""summary""": {"""mean coverage""": 35.44, """total target size""": 39036020}, """min_cov_target""": {"""0""": 100.0, """1""": 99.0, """3""": 98.77, """10""": 98.18, """15""": 97.59, """20""": 95.41, """50""": 0.88, """100""": 0.05, """500""": 0.03, """1000""": 0.03, """1500""": 0.03}, """bamstats""": {"""sequences""": 1055691016, """reads duplicated""": 128799765, """insert size average""": 493.5, """insert size standard deviation""": 118.57}}, """sample2""": {"""summary""": {"""mean coverage""": 35.44, """total target size""": 39036020}, """min_cov_target""": {"""0""": 100.0, """1""": 99.0, """3""": 98.77, """10""": 98.18, """15""": 97.59, """20""": 95.41, """50""": 0.88, """100""": 0.05, """500""": 0.03, """1000""": 0.03, """1500""": 0.03}, """bamstats""": {"""sequences""": 1055691016, """reads duplicated""": 128799765, """insert size average""": 493.5, """insert size standard deviation""": 118.57}}}
 
   '''
 # ---
 # name: test_load_bam_qc
-  BamQc(sample_data={'sample': BamQcData(summary={'mean coverage': 35.44, 'total target size': 39036020}, min_cov_target={0: 100.0, 1: 99.0, 3: 98.77, 10: 98.18, 15: 97.59, 20: 95.41, 50: 0.88, 100: 0.05, 500: 0.03, 1000: 0.03, 1500: 0.03}, bamstats={'sequences': 1055691016, 'reads duplicated': 65335430, 'insert size average': 488.03, 'insert size standard deviation': 115.27}), 'sample2': BamQcData(summary={'mean coverage': 35.44, 'total target size': 39036020}, min_cov_target={0: 100.0, 1: 99.0, 3: 98.77, 10: 98.18, 15: 97.59, 20: 95.41, 50: 0.88, 100: 0.05, 500: 0.03, 1000: 0.03, 1500: 0.03}, bamstats={'sequences': 1055691016, 'reads duplicated': 65335430, 'insert size average': 488.03, 'insert size standard deviation': 115.27})})
+  BamQc(sample_data={'sample': BamQcData(summary={'mean coverage': 35.44, 'total target size': 39036020}, min_cov_target={0: 100.0, 1: 99.0, 3: 98.77, 10: 98.18, 15: 97.59, 20: 95.41, 50: 0.88, 100: 0.05, 500: 0.03, 1000: 0.03, 1500: 0.03}, bamstats={'sequences': 1055691016, 'reads duplicated': 128799765, 'insert size average': 493.5, 'insert size standard deviation': 118.57}), 'sample2': BamQcData(summary={'mean coverage': 35.44, 'total target size': 39036020}, min_cov_target={0: 100.0, 1: 99.0, 3: 98.77, 10: 98.18, 15: 97.59, 20: 95.41, 50: 0.88, 100: 0.05, 500: 0.03, 1000: 0.03, 1500: 0.03}, bamstats={'sequences': 1055691016, 'reads duplicated': 128799765, 'insert size average': 493.5, 'insert size standard deviation': 118.57})})
 # ---