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Add explicit support for SV calling tools #68

Closed
5 tasks done
holtgrewe opened this issue Sep 13, 2022 · 0 comments · Fixed by #72
Closed
5 tasks done

Add explicit support for SV calling tools #68

holtgrewe opened this issue Sep 13, 2022 · 0 comments · Fixed by #72
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enhancement New feature or request

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@holtgrewe
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holtgrewe commented Sep 13, 2022 •
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Is your feature request related to a problem? Please describe.
The tool list that we explicitely support is somewhat dated.

Describe the solution you'd like
Add and document support for the following SV/CNV calling tools:

  • Delly2
  • Manta
  • GATK gCNV
  • Dragen SV
  • Dragen CNV

Describe alternatives you've considered
N/A

Additional context
N/A
@holtgrewe holtgrewe added the enhancement New feature or request label Sep 13, 2022
holtgrewe added a commit that referenced this issue Sep 13, 2022
@holtgrewe
Refactoring code to varfish-annotator-core (#68)
cc5dcaf 
This is done in preparation for adding explicit variant caller support.

Closes: #68
Related-Issue: #68
Projected-Results-Impact: none
holtgrewe added a commit that referenced this issue Sep 13, 2022
@holtgrewe
Refactoring code to varfish-annotator-core (#68)
410cb1f 
This is done in preparation for adding explicit variant caller support.

Closes: #68
Related-Issue: #68
Projected-Results-Impact: none
holtgrewe added a commit that referenced this issue Sep 13, 2022
@holtgrewe
Refactoring code to varfish-annotator-core (#68)
85037e8 
This is done in preparation for adding explicit variant caller support.

Closes: #68
Related-Issue: #68
Projected-Results-Impact: none
holtgrewe added a commit that referenced this issue Sep 13, 2022
@holtgrewe
Refactoring code to varfish-annotator-core (#68)
c167f3c 
This is done in preparation for adding explicit variant caller support.

Closes: #68
Related-Issue: #68
Projected-Results-Impact: none
@holtgrewe holtgrewe linked a pull request Sep 13, 2022 that will close this issue
Add explicit support for SV calling tools (#68) #72
Merged
@holtgrewe holtgrewe mentioned this issue Sep 13, 2022
Merged
holtgrewe added a commit that referenced this issue Sep 13, 2022
@holtgrewe
Refactoring code to varfish-annotator-core (#68)
d5243d4 
This is done in preparation for adding explicit variant caller support.

Closes: #68
Related-Issue: #68
Projected-Results-Impact: none
holtgrewe added a commit that referenced this issue Sep 13, 2022
@holtgrewe
Refactoring code to varfish-annotator-core (#68)
7f509c3 
This is done in preparation for adding explicit variant caller support.

Closes: #68
Related-Issue: #68
Projected-Results-Impact: none
holtgrewe added a commit that referenced this issue Sep 13, 2022
@holtgrewe
Refactoring code to varfish-annotator-core (#68)
753aea5 
This is done in preparation for adding explicit variant caller support.

Closes: #68
Related-Issue: #68
Projected-Results-Impact: none
holtgrewe added a commit that referenced this issue Sep 13, 2022
@holtgrewe
Adding explicit support for SV/CNV calling tools (#68)
fbbafef 
Closes: #68
Related-Issue: #68
Projected-Results-Impact: none
holtgrewe added a commit that referenced this issue Sep 13, 2022
@holtgrewe
Adding explicit support for SV/CNV calling tools (#68)
e09f0d4 
Closes: #68
Related-Issue: #68
Projected-Results-Impact: none
holtgrewe added a commit that referenced this issue Sep 13, 2022
@holtgrewe
Adding explicit support for SV/CNV calling tools (#68)
e372b3a 
Closes: #68
Closes: #60
Related-Issue: #68
Projected-Results-Impact: none
holtgrewe added a commit that referenced this issue Sep 13, 2022
@holtgrewe
Adding explicit support for SV/CNV calling tools (#68)
45c245a 
Closes: #68
Closes: #60
Related-Issue: #68
Projected-Results-Impact: none
holtgrewe added a commit that referenced this issue Sep 14, 2022
@holtgrewe
Adding explicit support for SV/CNV calling tools (#68)
23dfad3 
Closes: #68
Closes: #60
Related-Issue: #68
Projected-Results-Impact: none
holtgrewe added a commit that referenced this issue Sep 14, 2022
@holtgrewe
Adding explicit support for SV/CNV calling tools (#68)
caaed2b 
Closes: #68
Closes: #60
Related-Issue: #68
Projected-Results-Impact: none
holtgrewe added a commit that referenced this issue Sep 14, 2022
@holtgrewe
Adding explicit support for SV/CNV calling tools (#68)
181275e 
Closes: #68
Closes: #60
Related-Issue: #68
Projected-Results-Impact: none
holtgrewe added a commit that referenced this issue Sep 14, 2022
@holtgrewe
Adding explicit support for SV/CNV calling tools (#68)
eecf82f 
Closes: #68
Closes: #60
Related-Issue: #68
Projected-Results-Impact: none
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Add explicit support for SV calling tools (#68) varfish-org/varfish-annotator
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@holtgrewe