fix: allow loading JSON from .gz files (#22)

varfish-org · Mar 29, 2023 · cefd950 · cefd950
1 parent 48047b1
commit cefd950
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/src/db/create/txs/mod.rs b/src/db/create/txs/mod.rs
@@ -68,11 +68,13 @@ fn load_and_extract(
         genes: c_genes,
         transcripts: c_txs,
         ..
-    } = if json_path.ends_with(".gz") {
+    } = if json_path.extension().unwrap_or_default() == "gz" {
+        tracing::info!("(from gzip compressed file)");
         serde_json::from_reader(std::io::BufReader::new(flate2::read::GzDecoder::new(
             std::fs::File::open(json_path)?,
         )))?
     } else {
+        tracing::info!("(from uncompressed file)");
         serde_json::from_reader(std::io::BufReader::new(std::fs::File::open(json_path)?))?
     };
     tracing::info!(