Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

chore: Switch to using noodles group #459

Merged
merged 12 commits into from
Jun 3, 2024
Merged

chore: Switch to using noodles group #459

merged 12 commits into from
Jun 3, 2024

Conversation

tedil
Copy link
Contributor

@tedil tedil commented Jun 3, 2024

Switches from using separate noodles crates to the noodles workspace.

@tedil tedil requested a review from holtgrewe June 3, 2024 07:18
holtgrewe
holtgrewe previously approved these changes Jun 3, 2024
tedil added 2 commits June 3, 2024 09:24
# Conflicts:
#	Cargo.lock
#	Cargo.toml
#	src/common/keys.rs
#	src/common/noodles_utils.rs
#	src/dbsnp/cli/import.rs
#	src/dbsnp/pbs.rs
#	src/freqs/cli/import/auto.rs
#	src/freqs/cli/import/mod.rs
#	src/freqs/cli/import/mt.rs
#	src/freqs/cli/import/reading.rs
#	src/freqs/cli/import/xy.rs
#	src/freqs/serialized/auto.rs
#	src/freqs/serialized/mt.rs
#	src/freqs/serialized/xy.rs
#	src/gnomad_mtdna/cli/import.rs
#	src/gnomad_nuclear/cli/import.rs
#	src/gnomad_sv/cli/import/gnomad_cnv4.rs
#	src/gnomad_sv/cli/import/gnomad_sv2.rs
#	src/gnomad_sv/cli/import/gnomad_sv4.rs
#	src/helixmtdb/cli/import.rs
#	src/helixmtdb/pbs.rs
#	src/pbs/gnomad/gnomad2.rs
#	src/pbs/gnomad/gnomad3.rs
#	src/pbs/gnomad/gnomad4.rs
#	src/pbs/gnomad/mtdna.rs
tedil added 4 commits June 3, 2024 09:32
# Conflicts:
#	Cargo.lock
#	Cargo.toml
#	src/gnomad_sv/cli/import/gnomad_cnv4.rs
@tedil tedil requested a review from holtgrewe June 3, 2024 07:45
Copy link

codecov bot commented Jun 3, 2024

Codecov Report

Attention: Patch coverage is 46.25000% with 43 lines in your changes are missing coverage. Please review.

Project coverage is 74.15%. Comparing base (7842351) to head (3e3397e).

Files Patch % Lines
src/freqs/serialized/xy.rs 0.00% 12 Missing ⚠️
src/freqs/cli/import/mod.rs 0.00% 10 Missing ⚠️
src/freqs/serialized/auto.rs 0.00% 4 Missing ⚠️
src/freqs/serialized/mt.rs 0.00% 4 Missing ⚠️
src/freqs/cli/import/auto.rs 0.00% 3 Missing ⚠️
src/freqs/cli/import/mt.rs 0.00% 3 Missing ⚠️
src/freqs/cli/import/xy.rs 0.00% 3 Missing ⚠️
src/tsv/cli/import/par_tbi.rs 80.00% 2 Missing ⚠️
src/db_utils/cli/copy.rs 0.00% 1 Missing ⚠️
src/gnomad_sv/cli/import/gnomad_cnv4.rs 0.00% 1 Missing ⚠️
Additional details and impacted files
@@           Coverage Diff           @@
##             main     #459   +/-   ##
=======================================
  Coverage   74.15%   74.15%           
=======================================
  Files          78       78           
  Lines        8140     8140           
=======================================
  Hits         6036     6036           
  Misses       2104     2104           

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@tedil tedil merged commit 5868884 into main Jun 3, 2024
8 of 9 checks passed
@tedil tedil deleted the noodles-group branch June 3, 2024 08:53
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

3 participants