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vanrooij-lab

readme.md

Overview of the Van Rooij code repository

Over the last few years code that has been developed in the Van Rooij lab was collected here.

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If you are a member of the lab, to see a more elaborate explanation, and all available repositories, you need to log in to github, and make sure you are a member of our 'github team'. Ask the responisible person in the lab about this.

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  1. scRNAseq-HCM-human scRNAseq-HCM-human Public

    R 1

  2. cardio_img_analysis cardio_img_analysis Public

    Python 1

  3. Resources_bioinf_RNAseq Resources_bioinf_RNAseq Public

    Files that collect some published resources, e.g. regarding TFs or L-R interactions.

    R

Repositories

Showing 9 of 9 repositories
  • scRNAseq-HCM-human Public
    vanrooij-lab/scRNAseq-HCM-human’s past year of commit activity
    R 1 0 1 0 Updated May 30, 2024
  • cardio_img_analysis Public
    vanrooij-lab/cardio_img_analysis’s past year of commit activity
    Python 0 1 0 0 Updated May 27, 2024
  • .github Public

    Overview of the Van Rooij code repository

    vanrooij-lab/.github’s past year of commit activity
    0 0 0 0 Updated Apr 4, 2024
  • chip-seq-pipeline2 Public Forked from 4dn-dcic/chip-seq-pipeline2

    4DN chip-seq pipeline, inherited from ENCODE chip-seq pipeline

    vanrooij-lab/chip-seq-pipeline2’s past year of commit activity
    Python 0 MIT 125 0 0 Updated Feb 9, 2024
  • Resources_bioinf_RNAseq Public

    Files that collect some published resources, e.g. regarding TFs or L-R interactions.

    vanrooij-lab/Resources_bioinf_RNAseq’s past year of commit activity
    R 0 0 0 0 Updated Oct 4, 2022
  • scRNAseq-HCM-human--old Public
    vanrooij-lab/scRNAseq-HCM-human--old’s past year of commit activity
    R 0 0 0 0 Updated Aug 18, 2020
  • External_Cartal_HCA_Heart Public Forked from cartal/HCA_Heart

    This is the official repository for the Human Cell Atlas Heart project.

    vanrooij-lab/External_Cartal_HCA_Heart’s past year of commit activity
    Jupyter Notebook 0 17 0 0 Updated Jul 28, 2020
  • RaceID3_StemID2_package Public Forked from dgrun/RaceID3_StemID2_package

    Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. This is a novel R package of the RaceID3 and StemID2 method including novel functionalities and performance improvements compared to the previous RaceID3/StemID2 version in the RaceID3_StemID2 repository. The RaceID3_StemID2 repository will not be updated …

    vanrooij-lab/RaceID3_StemID2_package’s past year of commit activity
    R 0 11 0 0 Updated Mar 20, 2019
  • FateID Public Forked from dgrun/FateID

    R package for the inference of cell fate bias from single-cell RNA-seq data.

    vanrooij-lab/FateID’s past year of commit activity
    R 0 8 0 0 Updated Feb 27, 2019

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