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Unique Atom Types and Charges #5

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shenoynikhil opened this issue Sep 27, 2023 · 3 comments
Open

Unique Atom Types and Charges #5

shenoynikhil opened this issue Sep 27, 2023 · 3 comments

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@shenoynikhil
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For each dataset, it would be nice to have a property that returns,

  • Unique Atom Numbers
  • Unique Atom Number - Charge Pairings
  • Mean and Std of energies
@prtos
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prtos commented Oct 23, 2023

@FNTwin add meta statistics about each dataset and the full collection. statistics must include

  • number of unique molecules
  • number of unique molecules and charge
  • number of conformers per molecules distributions
  • heatmap of number of share molecules between datasets
  • energy distributions per conformers, energy range distributions per molecule
  • input distributions: chemical space, conformational space
  • heatmap of similarity of input spaces of between dataset.
  • heatmap of similarity of target (energy and force) spaces of between dataset.

@shenoynikhil
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@prtos Just as a heads up because this might be an issue during this task, some datasets like ANI and Nabla have the len(data['name']['uniques']) == number of conformers and not number of molecules. I checked them and it seems like it is a unique identifier for a conformer and not a molecule.

@prtos
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prtos commented Oct 23, 2023

ok I see. I'll look into it.

@FNTwin FNTwin mentioned this issue Oct 27, 2023
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