Merge pull request #82 from usegalaxy-eu/checklist_update

Automatic update of ENA Sample Checklists
usegalaxy-eu · Jun 12, 2023 · e372158 · e372158
2 parents 455c38d + 5e35798
commit e372158
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diff --git a/ena_upload/templates/ENA_template_PLATFORM.xml b/ena_upload/templates/ENA_template_PLATFORM.xml
@@ -66,8 +66,10 @@
     <INSTRUMENT_MODEL py:when="row.instrument_model.lower().strip() == 'unspecified'">unspecified</INSTRUMENT_MODEL>
 </OXFORD_NANOPORE>
 <PACBIO_SMRT py:when="row.platform.lower().strip() == 'pacbio_smrt'" py:choose="">
+    <INSTRUMENT_MODEL py:when="row.instrument_model.lower().strip() == 'onso'">Onso</INSTRUMENT_MODEL>
     <INSTRUMENT_MODEL py:when="row.instrument_model.lower().strip() == 'pacbio rs'">PacBio RS</INSTRUMENT_MODEL>
     <INSTRUMENT_MODEL py:when="row.instrument_model.lower().strip() == 'pacbio rs ii'">PacBio RS II</INSTRUMENT_MODEL>
+    <INSTRUMENT_MODEL py:when="row.instrument_model.lower().strip() == 'revio'">Revio</INSTRUMENT_MODEL>
     <INSTRUMENT_MODEL py:when="row.instrument_model.lower().strip() == 'sequel'">Sequel</INSTRUMENT_MODEL>
     <INSTRUMENT_MODEL py:when="row.instrument_model.lower().strip() == 'sequel ii'">Sequel II</INSTRUMENT_MODEL>
     <INSTRUMENT_MODEL py:when="row.instrument_model.lower().strip() == 'sequel iie'">Sequel IIe</INSTRUMENT_MODEL>

diff --git a/ena_upload/templates/SRA.common.xsd b/ena_upload/templates/SRA.common.xsd
@@ -999,8 +999,10 @@
 
     <xs:simpleType name="typePacBioModel">
         <xs:restriction base="xs:string">
+            <xs:enumeration value="Onso"/>
             <xs:enumeration value="PacBio RS"/>
             <xs:enumeration value="PacBio RS II"/>
+            <xs:enumeration value="Revio"/>
             <xs:enumeration value="Sequel"/>
             <xs:enumeration value="Sequel II"/>
             <xs:enumeration value="Sequel IIe"/>