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disable HDF5 file locking #2314

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merged 1 commit into from
Dec 8, 2024
Merged

disable HDF5 file locking #2314

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3 changes: 2 additions & 1 deletion files/galaxy/dynamic_job_rules/production/total_perspective_vortex/default_tool.yml.j2
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Expand Up @@ -5,7 +5,8 @@ tools:
default:
cores: 1
mem: cores * 3.8
env: {}
env:
HDF5_USE_FILE_LOCKING: "FALSE"
context:
partition: main
test_cores: 1 # TODO: test_mem?
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1 change: 1 addition & 0 deletions group_vars/galaxyservers.yml
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Expand Up @@ -147,6 +147,7 @@ galaxy_process_env: # environment variables for gunicorn and handlers processes
DRMAA_LIBRARY_PATH: "/usr/lib/slurm-drmaa/lib/libdrmaa.so.1"
SINGULARITY_CACHEDIR: "{{ galaxy_user_singularity_cachedir }}"
SINGULARITY_TMPDIR: "{{ galaxy_user_singularity_tmpdir }}"
HDF5_USE_FILE_LOCKING: "FALSE"

#########################################
# group_galaxy_config contains variables for galaxy_config that can be overridden by variables in host_galaxy_config (defined in host_vars)
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