Add _JAVA_OPTIONS env vars to bbtools

usegalaxy-au · Sep 17, 2024 · 6e42d09 · 6e42d09
1 parent 3ac1d99
commit 6e42d09
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml b/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml
@@ -1293,6 +1293,9 @@ tools:
       cores: 1
       mem: 3.8
   toolshed.g2.bx.psu.edu/repos/iuc/bbtools_.*:
+    env:
+      SINGULARITYENV__JAVA_OPTIONS: -Xmx{int(mem)}G -Xms1G
+      _JAVA_OPTIONS: -Xmx{int(mem)}G -Xms1G
     params:
       singularity_enabled: true
   toolshed.g2.bx.psu.edu/repos/iuc/bcftools_mpileup/bcftools_mpileup/.*: