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singularity for newly requested tools
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cat-bro authored Nov 8, 2024
1 parent cb728d8 commit 0119bd5
Showing 1 changed file with 9 additions and 0 deletions.
Original file line number Diff line number Diff line change
Expand Up @@ -274,6 +274,9 @@ tools:
params:
singularity_enabled: true
tmp_dir: true
toolshed.g2.bx.psu.edu/repos/bgruening/itsx/itsx/.*:
params:
singularity_enabled: true
toolshed.g2.bx.psu.edu/repos/bgruening/mitohifi/mitohifi/.*:
cores: 8
mem: 24 # TODO: this is 8/16 in shared db. If no further problems update this in shared db
Expand Down Expand Up @@ -1429,6 +1432,9 @@ tools:
toolshed.g2.bx.psu.edu/repos/iuc/cat_bins/cat_bins/.*:
cores: 5
mem: 19.1
toolshed.g2.bx.psu.edu/repos/iuc/cemitool/cemitool/.*:
params:
singularity_enabled: true
toolshed.g2.bx.psu.edu/repos/iuc/chira_.*:
params:
singularity_enabled: true
Expand Down Expand Up @@ -1553,6 +1559,9 @@ tools:
if: input_size < 0.01
cores: 1
mem: 3.8
toolshed.g2.bx.psu.edu/repos/iuc/fastani/fastani/.*:
params:
singularity_enabled: true
toolshed.g2.bx.psu.edu/repos/iuc/feelnc/feelnc/.*:
params:
singularity_enabled: true
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