Urban Observatory Data Skeleton

This a skeleton repo for configuring and orchestrating Urban Observatory In a Box federated network of sensors and services. This codebase is based on implementations instrumented at The Newcastle Urban Observatory.

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⚠️ IMPORTANT⚠️

This code is work in progress and experimental.

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Specification

This repository is used for spinning up Urban Observatory services. It uses uo-data-box as codebase and .env & *.sh files for controlling docker-compose files and various other scripts.

Authors

uo-data-skeleton has been developed by:

• Aare Puussaar (Newcastle University)

Contributors:

• Luke Smith (Newcastle University)

Deployment

NOTE! This guide assumes that both uo-data-box and uo-data-skeleton are checked out on the installation VM(s). UO-INSTANCE is referred to as application or instance andUO-BROKERS are referred to as list broker environments to provide brokerage for, separated by a dot (e.g. BROKER.RunService1, BROKER.RunService2).

Configuration

All the services in uo-data-box and /shared are configures using deployment specific .env variables files located in /config which are loaded in using service(s) scripts.

# use example to create your UO-INSTANCE configuration
cp config/instance.env.example config/${UO-INSTANCE}.env

Variables

NOTE! Variables services need different set of variables to start. When connecting to database using docker networks you MUST use container_name (UO_DB_HOST variable) and default port to connect. If changing default UO_*_AMQP_USERNAME, UO_*_QUEUE or UO_BROKER_EXCHANGE_COV variables, RabbitMQ definitions.json file needs to be changed manually.

Name	Usage	Values
UO_INSTANCE	The instance name of deployment	example city
UO_DOMAIN	The deployment domain/location	example newcastle
UO_HOST	The hostname of the UO installation	example urbanobservatory.ac.uk
UO_QUEUE_HOST	The hostname of your rabbitmq
UO_DATA_HOST	The hostname of your database
UO_WEB_HOST	The hostname of your webservice
UO_WEB_FILE_BASE	The base URL of your file service
UO_API_BASE	The base URL of your api service
UO_API_URL_EXCLUSIONS	The variable for stripping URLs for api service	Example '"Urban Sciences Building: "+"Floor 1: "'*
UO_API_RESTRICT_KEY	The key for restricting data from api service	Example 0a8e3548-0110-474f-8e23-f5322aed344c**
UO_WEBSOCKET_SERVER_PORT	The stream websocket port
UO_DB_ORGANISATION	The organisation of your database	example uo
UO_DB_SYSTEM	The system of your database	example city
TABLE_PREFIX	The table prefix of your database	example ${UO_DB_ORGANISATION}_${UO_DB_SYSTEM}_
POSTGRES_DB	The name of your database	example ${UO_DB_ORGANISATION}-${UO_DB_SYSTEM}
POSTGRES_USER	The username for your database	example uo-admin
POSTGRES_PASSWORD	The password for your database	*******
POSTGRES_PORT	The port number for your database	example 5432
UO_DB_HOST	The docker hostname of your database	default ${UO_INSTANCE}-timescaledb
UO_DB_PORT	The docker port of your database	default 5432
UO_DB_NAME	The docker name of your database	default ${POSTGRES_DB}
UO_DB_USER	The docker username for your database	default ${POSTGRES_USER}
UO_DB_PASS	The docker password for your database	default ${POSTGRES_PASSWORD}
DB_TYPE	The type of your database (for backups)	default timescale
DB_BACKUP_MONITOR_PORT	The backup monitor port	example 8084
DIFF_SCHEDULE	The schedule to run the diff backup on	* * * * *
SCHEMA_SCHEDULE	The schedule to run the schema backup on	(optional)
FULL_SCHEDULE	The schedule to run the full backup on	(optional)
RABBITMQ_HOST	The hostname of your rabbitmq	default ${UO_QUEUE_HOST}
RABBITMQ_NODENAME	The nodename of your rabbitmq instance	default uo-${UO_INSTANCE}@rabbitmq
RABBITMQ_PORT_ADMIN	The admin UI port of your rabbitmq	example 5672
RABBITMQ_PORT_DATA	The data port of your rabbitmq	example 15672
RABBITMQ_PORT_MONITOR	The monitor port of your rabbitmq	example 15692
UO_MASTER_BROKER_AMQP_HOST	The storage queue hostname	default ${RABBITMQ_HOST}
UO_MASTER_BROKER_AMQP_PORT	The storage queue port	default ${RABBITMQ_PORT_DATA}
UO_MASTER_BROKER_AMQP_USERNAME	The storage queue username	default store
UO_MASTER_BROKER_AMQP_PASSWORD	The storage queue password	*******
UO_MASTER_BROKER_AMQP_QUEUE	The storage queue name	default uo.master.store
UO_BROKER_AMQP_HOST	The broker service queue name	default ${RABBITMQ_HOST}
UO_BROKER_AMQP_PORT	The broker service queue port	default ${RABBITMQ_PORT_DATA}
UO_BROKER_AMQP_USERNAME	The broker service queue username	default broker
UO_BROKER_AMQP_PASSWORD	The broker service queue password	*******
UO_BROKER_EXCHANGE_COV	The broker service exchange name	default uo.raw
UO_BROKER_CONFIGURATION	The broker service feeds config name	example IMG.OpenFeeds
UO_BROKER_CONFIGURATION_USERNAME	The broker service basic auth username	(optional) example uo
UO_BROKER_CONFIGURATION_PASSWORD	The broker service basic auth password	(optional) *******
UO_BROKER_CONFIGURATION_PORT	The broker service server port	(optional) default 8080
UO_BROKER_CONFIGURATION_API_USERNAME	The broker service API auth username	(optional) example uo
UO_BROKER_CONFIGURATION_API_PASSWORD	The broker service API auth password	(optional) *******
UO_STREAM_AMQP_HOST	The stream service queue hostname	default ${RABBITMQ_HOST}
UO_STREAM_AMQP_PORT	The stream service queue port	default ${RABBITMQ_PORT_DATA}
UO_STREAM_AMQP_USERNAME	The broker service queue username	default stream
UO_STREAM_AMQP_PASSWORD	The broker service queue password	*******
UO_STREAM_QUEUE	The broker service queue name	default uo.master.stream
CODE_BASE_DIR	The location of the uo-data-box codebase	default ../uo-data-box
FILE_SERVICE_DIR	The location of the public files to serve	default ../../${CODE_BASE_DIR}/archive/public
BACKUP_DIR	The location of database backups	default /srv/backup

* UO_API_URL_EXCLUSIONS purpose is to strip the provided phrases from the algorithm that generates URLs, so for example an entity called "Urban Sciences Building: Floor 1" becomes simply /sensors/entity/floor-1/. ** UO_API_RESTRICT_KEY is bespoke variable used in one of UO deployments to restrict data access on the API.

Building master image:

./build.sh ${UO-INSTANCE} [docker-compose options]

DB service:

./db-service.sh ${UO-INSTANCE} start [docker-compose options]

Queue services:

NOTE! Queue services use RabbitMQ configuration from definitions.json which is injected with passwords from .env variables on service startup and copied to uo-data-box codebase next to rabbitmq compose file. See the template configuration in /config. Also make sure to check if exposed ports are not already taken on host before running.

./queue-services.sh ${UO-INSTANCE} start [docker-compose options]

Data services:

./data-services.sh ${UO-INSTANCE} start [docker-compose options]

Broker services:

NOTE! check if exposed service port is not already taken on host before running. Codebase includes an example of UTMC services that requires a custom docker-compose file. It uses proprietary image in the pipeline, but it is still included as example of broker configuration.

./broker-services.sh ${UO-INSTANCE} ${UO-BROKERS} start [docker-compose options]

Web services (APIs, streams, docs):

# create additional networks if needed
docker network create web # used as traefik network
docker network create ${UO-INSTANCE}-stream
docker network create ${UO-INSTANCE}-api

./web-services.sh ${UO-INSTANCE} start [docker-compose options]

NOTE! Current docker compose setup for web services is using Traefik 1.7 as a reverse proxy to assign services endpoints and deal with API rate limits. That means that traefik needs to be installed an started in the container on network called web.

File service (hosting uploaded files on web):

# user .env variable as file path that is being exposed using nginx
./file-service.sh ${UO-INSTANCE} start [docker-compose options]

Backup service

# add backup folders to your host machine, for example:
mkdir -p /srv/backup/${UO-INSTANCE}/data # add backup data location
mkdir -p /srv/backup/${UO-INSTANCE}/cache # add diff cache location

./backup-service-new.sh ${UO-INSTANCE} start [docker-compose options]

Monitor services (web and data):

./monitor-services.sh ${UO-INSTANCE} {data|web}

Optimisation

Cluster data

./cluster-data.sh ${UO-INSTANCE}

Analyse data

./analyse-data.sh ${UO-INSTANCE}

Utilities

Filter data

# uses start, end date and storage table names as command line arguments
./filter-data.sh ${UO-INSTANCE} start_date end_date uo_data_real [uo_data_int uo_data_bool uo_data_string uo_data_json]

Restore backup data

# table=restore normal tables, data=restore data (hyper) tables
# filespath is the location of backup files (for folder /* is needed)
./restore-data.sh ${UO-INSTANCE} {tables|data|temp} filespath
# also creates a logfile (in the same directory) of fails when restoring files

License

UO DATA SKELETON is provided under MIT:

Copyright (c), 2021 Urban Observatory at Newcastle University, Aare Puussaar, Luke Smith

<[email protected]>
<[email protected]>
<[email protected]>

Licensed under the MIT License (the "License"); you may not use this file except in compliance with the License.
You may obtain a copy of the License at

	https://opensource.org/licenses/MIT

Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.

Future Ideas

• add configurable queue name and user variables
• multiple broker authentication handling for endpoints
• implement API key keys