Merge branch 'develop' into bugfix/nml

umr-lops · Sep 8, 2023 · d86cabc · d86cabc
2 parents 882000b + 991daf8
commit d86cabc
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Showing 4 changed files with 30 additions and 27 deletions.
diff --git a/.github/workflows/gnu.yml b/.github/workflows/gnu.yml
@@ -7,7 +7,7 @@ concurrency:
   cancel-in-progress: true
 
 env:
-  cache_key: gnu8
+  cache_key: gnu11
   CC: gcc-10
   FC: gfortran-10
   CXX: g++-10
@@ -24,14 +24,14 @@ jobs:
     steps:
       - name: checkout-ww3
         if: steps.cache-env.outputs.cache-hit != 'true'
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
         with:
             path: ww3
       # Cache spack, OASIS, and compiler
       # No way to flush Action cache, so key may have # appended
       - name: cache-env
         id: cache-env
-        uses: actions/cache@v2
+        uses: actions/cache@v3
         with:
           path: |
             spack
@@ -45,7 +45,7 @@ jobs:
         run: |
           # Install NetCDF, ESMF, g2, etc using Spack
           sudo apt install cmake
-          git clone -c feature.manyFiles=true https://github.com/spack/spack.git
+          git clone -c feature.manyFiles=true https://github.com/JCSDA/spack.git
           source spack/share/spack/setup-env.sh
           spack env create ww3-gnu ww3/model/ci/spack_gnu.yaml
           spack env activate ww3-gnu
@@ -77,13 +77,13 @@ jobs:
 
     steps:
       - name: checkout-ww3
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
         with:
             path: ww3
 
       - name: cache-env
         id: cache-env
-        uses: actions/cache@v2
+        uses: actions/cache@v3
         with:
           path: |
             spack

diff --git a/.github/workflows/intel.yml b/.github/workflows/intel.yml
@@ -8,34 +8,34 @@ concurrency:
 
 # Set I_MPI_CC/F90 so Intel MPI wrapper uses icc/ifort instead of gcc/gfortran
 env:
-  cache_key: intel7
+  cache_key: intel10
   CC: icc
   FC: ifort
   CXX: icpc
   I_MPI_CC: icc
   I_MPI_F90: ifort
 
 # Split into a dependency build step, and a WW3 build step which
-# builds multiple switches in a matrix. The setup is run once and 
+# builds multiple switches in a matrix. The setup is run once and
 # the environment is cached so each build of WW3 can share the dependencies.
 
 jobs:
   setup:
-    runs-on: ubuntu-20.04 
+    runs-on: ubuntu-20.04
 
     steps:
 
       - name: checkout-ww3
         if: steps.cache-env.outputs.cache-hit != 'true'
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
         with:
             path: ww3
 
       # Cache spack, OASIS, and compiler
       # No way to flush Action cache, so key may have # appended
       - name: cache-env
         id: cache-env
-        uses: actions/cache@v2
+        uses: actions/cache@v3
         with:
           path: |
             spack
@@ -51,26 +51,27 @@ jobs:
           sudo apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB
           echo "deb https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list
           sudo apt-get update
-          sudo apt-get install intel-oneapi-mpi-devel intel-oneapi-openmp intel-oneapi-compiler-fortran intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic
+          sudo apt-get install intel-oneapi-dev-utilities intel-oneapi-mpi-devel intel-oneapi-openmp intel-oneapi-compiler-fortran intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic
 
       # Build WW3 spack environment
       - name: install-dependencies-with-spack
         if: steps.cache-env.outputs.cache-hit != 'true'
         run: |
           # Install NetCDF, ESMF, g2, etc using Spack
           . /opt/intel/oneapi/setvars.sh
-          sudo mv /usr/local /usrlocal_renamed
-          sudo apt install cmake
-          git clone -c feature.manyFiles=true https://github.com/spack/spack.git
+          git clone -c feature.manyFiles=true https://github.com/JCSDA/spack.git
           source spack/share/spack/setup-env.sh
           ln -s $(realpath $(which gcc)) spack/lib/spack/env/intel/gcc # spack/make bug in ESMF
           spack env create ww3-intel ww3/model/ci/spack_intel.yaml
           spack env activate ww3-intel
           spack compiler find
-          spack external find cmake
+          sudo apt install cmake
+          spack external find
           spack add intel-oneapi-mpi
+          spack config add "packages:all:require:['%intel']"
           spack concretize
           spack install --dirty -v --fail-fast
+          spack clean --all
 
       - name: build-oasis
         if: steps.cache-env.outputs.cache-hit != 'true'
@@ -91,17 +92,17 @@ jobs:
     strategy:
       matrix:
         switch: [Ifremer1, NCEP_st2, NCEP_st4, ite_pdlib, NCEP_st4sbs, NCEP_glwu, OASACM, UKMO, MULTI_ESMF]
-    runs-on: ubuntu-20.04 
+    runs-on: ubuntu-20.04
 
     steps:
       - name: checkout-ww3
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
         with:
             path: ww3
 
       - name: cache-env
         id: cache-env
-        uses: actions/cache@v2
+        uses: actions/cache@v3
         with:
           path: |
             spack
@@ -116,8 +117,8 @@ jobs:
           source spack/share/spack/setup-env.sh
           spack env activate ww3-intel
           cd ww3
-          export CC=mpicc
-          export FC=mpif90
+          export CC=mpiicc
+          export FC=mpiifort
           export OASISDIR=${GITHUB_WORKSPACE}/work_oasis3-mct
           mkdir build && cd build
           if [[ ${{ matrix.switch }} == "MULTI_ESMF" ]]; then

diff --git a/model/ci/spack_gnu.yaml b/model/ci/spack_gnu.yaml
@@ -13,7 +13,8 @@ spack:
   - [email protected]
   - [email protected]
   - [email protected]
-  - [email protected]~pio~pnetcdf~xerces
+  - [email protected]+fortran~pnetcdf
+  - [email protected]~debug~xerces+external-parallelio
   view: true
   concretizer:
     unify: when_possible
diff --git a/model/ci/spack_intel.yaml b/model/ci/spack_intel.yaml
@@ -5,16 +5,17 @@ spack:
       providers:
         mpi: [intel-oneapi-mpi]
   specs:
+  - [email protected]~dap
+  - [email protected]
+  - [email protected]
+  - [email protected]
   - [email protected]~shared
   - [email protected]~shared
   - [email protected]+mpi+metis~shared
-  - [email protected]~dap
-  - [email protected]
   - [email protected]
-  - [email protected]
-  - [email protected]
   - [email protected]
-  - [email protected]~pio~pnetcdf~xerces
+  - [email protected]+fortran~pnetcdf
+  - [email protected]~debug~xerces+external-parallelio
   - intel-oneapi-mpi %intel
   view: true
   concretizer: