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adding border to table
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maryjgoldman authored Oct 11, 2024
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16 changes: 8 additions & 8 deletions hub_gdc.xenahubs.net/info.mdown
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Expand Up @@ -9,36 +9,36 @@ New for this release, we worked to not have samples that have no genomic data an
## Supported data types

<table class="tg"><thead>
<tr>
<tr style="outline: thin solid">
<th class="tg-0pky"><span style="font-weight:bold">Type of data</span></th>
<th class="tg-0pky"><span style="font-weight:bold">Data</span></th>
</tr></thead>
<tbody>
<tr>
<tr style="outline: thin solid">
<td class="tg-0pky">Copy Number Variation</td>
<td class="tg-0pky">* Allele-specific Copy Number Segment (ASCAT2, ASCAT3)<br>* Copy Number Segment (AscatNGS)<br>* Masked Copy Number Segment (DNAcopy)<br>* Gene Level Copy Number (ABSOLUTE, ASCAT2, ASCAT3, AscatNGS)</td>
</tr>
<tr>
<tr style="outline: thin solid">
<td class="tg-0pky">Somatic Mutation</td>
<td class="tg-0pky">* Ensemble Somatic Variant (WXS)<br>* Ensemble Somatic Variant (Targeted Sequencing)</td>
</tr>
<tr>
<tr style="outline: thin solid">
<td class="tg-0pky">Gene Expression RNAseq</td>
<td class="tg-0pky">* STAR (Counts, FPKM, FPKM-UQ, TPM)</td>
</tr>
<tr>
<tr style="outline: thin solid">
<td class="tg-0pky">Protein expression</td>
<td class="tg-0pky">* Protein Expression Quantification</td>
</tr>
<tr>
<tr style="outline: thin solid">
<td class="tg-0pky">DNA Methylation</td>
<td class="tg-0pky">* Illumina Human Methylation 27K<br>* Illumina Human Methylation 450K<br>* Illumina Human Methylation epic v2</td>
</tr>
<tr>
<tr style="outline: thin solid">
<td class="tg-0pky">miRNA Expression</td>
<td class="tg-0pky">* stem loop</td>
</tr>
<tr>
<tr style="outline: thin solid">
<td class="tg-0pky">Phenotype, clinical, and survival data</td>
<td class="tg-0pky"></td>
</tr>
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